GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002731-TA|BGIBMGA002731-PA|undefined
         (610 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   2.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   2.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 173 PKNSSPILDPHKTTDVSTKSSPIAVVA 199
           PK   P L+ HK  +++ K  PIA+VA
Sbjct: 254 PKQELPDLN-HKPLNLTIKKMPIAIVA 279


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 173 PKNSSPILDPHKTTDVSTKSSPIAVVA 199
           PK   P L+ HK  +++ K  PIA+VA
Sbjct: 146 PKQELPDLN-HKPLNLTIKKMPIAIVA 171


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 12  GDSTP-GSDVGERITRLFPKCRPKNMQHQHDRLNSGLEARDANNAS 56
           G+ TP GS+    IT   P   P   QH+++  N        N +S
Sbjct: 252 GNITPHGSNTSSLITTPSPSASPLAYQHEYNSFNWTANGHGHNTSS 297


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 376 FQDLDYELKRQTQECPSENGMDGSESEWPQVTEPLDSPHTVNN 418
           F+D   EL RQT + PS +  + + SE     +  D  H  ++
Sbjct: 236 FKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHH 278


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 383 LKRQTQECPSENGMDGSESEWPQVTEPLDSPHTVNNHT 420
           + R+ Q+CP     +G E   P+  + L+      + T
Sbjct: 1   MPRRKQDCPKRMKWEGGEEGSPEEGDKLEGDEDTGSMT 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,685
Number of Sequences: 317
Number of extensions: 5894
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 610
length of database: 114,650
effective HSP length: 61
effective length of query: 549
effective length of database: 95,313
effective search space: 52326837
effective search space used: 52326837
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)