GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002731-TA|BGIBMGA002731-PA|undefined
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    36   0.016
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    35   0.038
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    32   0.27 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    32   0.27 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    30   0.81 
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    30   0.81 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.81 
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    30   1.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   2.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   3.3  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    28   4.3  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    28   4.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   4.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   4.3  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    28   4.3  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    28   4.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   7.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   7.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   7.6  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 362 PVQTQLNANDEVVNFQDLDYELKRQTQECP-SENGMDGSESEWPQVTEPLDSPHTVNNHT 420
           PVQ  + AN E  NFQ      +    EC   +N +  S S +P         H V NH 
Sbjct: 18  PVQGSIPANSEATNFQ--QNNSRENKSECELRQNSIAASMSAYPNGMYAGAENHNVENHE 75

Query: 421 NF--LGLQQQRSVYTEPIVH 438
           N+  +G      VY + +V+
Sbjct: 76  NYTMVGHDHMEEVYGDDLVN 95


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 101 VRKLRHNNTHKHNLRNKVRSLGKDTIDHGVDNINNEISIHRLNSEQKKII 150
           ++ +R+NN  K NL+NK+ ++ K+       NINNE  +  + + Q KI+
Sbjct: 881 LKSIRNNNERKRNLQNKISNMDKEV---EAININNEGLVTEIKTLQDKIM 927



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 32   RPKNMQHQHDRLNSGLEARDANNASSDEERGDGQLVILNSKGGTYKLRDSRIIEIAGGRE 91
            R +N+Q++   ++  +EA + NN     E    Q  I+   G  Y+++ S++ ++    +
Sbjct: 890  RKRNLQNKISNMDKEVEAININNEGLVTEIKTLQDKIMEIGGIRYRIQKSKVDDLHEQLK 949

Query: 92   LYSQSRTKAVRKLRHNNTHKHNLRNKVRSLGK--DTIDHGVDNINNEI-SIHRLNSEQKK 148
                   K   K + N     + + ++ +L    DT    +  +  E+ S+++   E K 
Sbjct: 950  FVKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKS 1009

Query: 149  IIR 151
             +R
Sbjct: 1010 RLR 1012


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 225 DIDMSVKRTIDHIKNGDSDMLNNKSEMSCD 254
           DI+ ++K T+D + NG SD  NN+ E+  D
Sbjct: 859 DINQNLKETLDKLLNGSSDFKNNEIELLHD 888


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 166 EQNSMGIPKNSSPILDPHKTTDVSTKSSPIAVVADGEVMVLDENDDWKGLRTEPDPSDND 225
           E +S     +SS      +++   + SS  +  ++ E    D +       +E + S  D
Sbjct: 192 ESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSED 251

Query: 226 IDMSVKRTIDHIKNG--DSDMLNNKSEMSCDGASDSSRSGEDMRNVSPSGVWMSGDED 281
            D S   +    ++   DSD  +N S+   D +SDSS S  +  +        S D D
Sbjct: 252 SDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSD 309



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 199 ADGEVMVLDENDDWKGLRTEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSCDGASD 258
           A G     DE+D      +E    DND   S   +     + DSD     S  S D  S+
Sbjct: 102 ASGSGSSSDESDS-SSSESESSSEDNDSSSSSSDSESESSSEDSD----SSSSSSDSESE 156

Query: 259 SSRSGEDMRNVSPSGVWMSGDED 281
           SS  G D  + S S    S  ED
Sbjct: 157 SSSEGSDSSSSSSSSESESSSED 179



 Score = 30.7 bits (66), Expect = 0.62
 Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 166 EQNSMGIPKNSSPILDPHKTTDVSTKSSPIAVVADGEVMVLDENDDWKGLRTEPDPSDND 225
           E N      + S      + +D S+ SS     +  E    D +       +E    DND
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGS--DSSSSSSSSESESSSEDND 181

Query: 226 IDMSVKRTIDHIKNGDSDMLNNKSEMSCDGASDSSRSGEDMRNVSPSGVWMSGDED 281
              S   +     + DSD     S  S D  S+SS  G D  + S S    S  ED
Sbjct: 182 SSSSSSDSESESSSEDSD----SSSSSSDSESESSSEGSDSSSSSSSSESESSSED 233



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 134 NNEISIHRLNSEQKKIIRHTSPTYTNGDRNPIEQNSMGIPKNSSPILDPHKTTDVSTKSS 193
           +N+ S    +SE +     +  + ++ D    E +S G   +SS      +++     SS
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSES-ESSSEGSDSSSSSSSSESESSSEDNDSS 237

Query: 194 PIAVVADGEVMVLDENDDWKGLRTEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSC 253
             +  ++ E    D +       +E + S  D D S   + D   +  SD  +++SE S 
Sbjct: 238 SSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSS-SNSSDSEDDSSSDSSDSESESSS 296

Query: 254 DGA--------SDSSRSGED 265
           + +        SDSS S ED
Sbjct: 297 EDSDSTSSSSDSDSSSSSED 316


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 210 DDWKGLRTEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSCDGASDSSRSGEDMRNV 269
           DDW+    EP+ ++N+  ++ K+  D   +     + +K +   D   D  ++     NV
Sbjct: 418 DDWEAALEEPEVAENNEVVTEKKETDIKSDAVEHSIKDKEDSKTDKVDDIPQAAPAESNV 477

Query: 270 SPS 272
           S S
Sbjct: 478 SES 480


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 44  NSGLEARDANNASSDEERGDGQLVILNSKGGTYKLRDSRIIEIAGGRELYSQSRTKAVRK 103
           NS     +A N +S+    DGQ      +  + +LR+       G +   SQ     V  
Sbjct: 450 NSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQPAWNVSS 509

Query: 104 LRHNNTHKHNLRNKVRSLGKDTIDHGVDNINN---EISIHRLNSEQKKIIRHTSPT 156
              NN+          +   +   H +  I++   E SI R ++ QK   +H S T
Sbjct: 510 RYQNNSKVQTTSRASENADTNKTQHNIKYIDSYVPEYSIARQSANQKTNEQHPSST 565


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 217 TEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSCDGASDSSRSGEDMRNVSPSGVWM 276
           TE D ++ D   SVK          SD+LN+ SE +    ++   S  D  N SP+   +
Sbjct: 16  TEVDAAEQDA-ASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTI 74

Query: 277 SGDED 281
           +  ED
Sbjct: 75  NKGED 79


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 184 KTTDVSTKSSPIAVVADG-EVMVLDENDDWKGLRTEPDPSDNDIDMSVK 231
           K  D++ +     V  DG E++ LDEND      TE    DND++ S+K
Sbjct: 351 KRNDLNNEEPNSVVAEDGSEIITLDENDQSPNEATEK-LRDNDLEESLK 398


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 204 MVLDENDDWKGLRTEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSCD---GASDSS 260
           M+  +N+ W     E  P+ + +       + +++  D ++     + + D   G +D  
Sbjct: 161 MLGQDNEHWTISLAEWSPTGHQLSFVYNNDL-YVRKNDGNVQRLTYDGTVDVFNGLTDWI 219

Query: 261 RSGEDMRNVSPSGVWMSGDEDKGRVTRV-IGELP-------IAEYEGSPRRYGVGTQKTT 312
              E +   SPS +W S D DK    ++   E+P        AE + S   +        
Sbjct: 220 YEEEVLS--SPSTIWWSPDSDKIAFLKLNESEIPTYHYPLYTAELDPSLPEFDYNKDMAI 277

Query: 313 RSPRPGFPQRVVTESRDITPPGSSTAFDYLYEFSETRKVLEEFFRCPTLPVQTQL-NAND 371
           + P+PG P   V+         +S+ F   +       V++      T  V  Q  N N 
Sbjct: 278 KYPKPGNPNPSVSLFVADLNSNASSNFSLWHNEPLAEPVVQNVLWVNTSSVLVQFTNRNS 337

Query: 372 EVVNFQDLDYELK 384
             +  + LD ELK
Sbjct: 338 TCITARLLDTELK 350


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 484 VKGLGIRTQNSETRVSIMENELSEMKVQMDASRAGVVTKLPLVEDGLSSGHASDNDNNNQ 543
           +K   + T+++E   SI  + LS + +   + R  +    P   D   S    DN++N Q
Sbjct: 251 IKTYSVSTESAERIDSIRSDNLSPLSLNTSSFRRPITKPTPFNSDSNISIDPKDNNSNKQ 310


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 218 EPDPSDNDIDMSVKRTIDHIKNGDSDMLNNKSEMSCDGASDSSRSGEDMRNVSPSGVWMS 277
           E   S+   D+ ++R +   K+ D    N+KS    +  SD S+  + +    PS     
Sbjct: 40  ETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESD-SKDRKTIETDQPSN--NI 96

Query: 278 GDEDKGRVTRVIGELPIAEYEGSPRRYGVGTQKTTR-SPRPGFPQRVVTESR 328
           GD    +  +  G       +     Y  G +  T+ S  P +P  VVTES+
Sbjct: 97  GDIKSQKSEKSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESK 148


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 297 YEGSPRRYGVGTQKTTRSPRPGFPQRVVTESRDITPPGSST--AFDYLYEFSETRKVLEE 354
           Y   P R+  G Q     P P    R    +   T    S    +++ ++ S+TR+V+E+
Sbjct: 574 YHKPPNRFVKGAQVAYCEPSPVLRLRTRDSNPSNTDSRESNHKKYNHFHQKSQTRRVMEQ 633

Query: 355 FFR--CPTLPVQTQLNANDEVVNFQDLDYE 382
           + R      P   + N+N     F   D E
Sbjct: 634 YDRNSWNPSPFSDESNSNTFSGKFDSADQE 663


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 334 GSSTAFDYLY--EFSETRKVLEEFFRCPTLPVQTQLNANDEVV 374
           G   +++ L+  EF+ TRK +   FRCP   ++  +   D V+
Sbjct: 641 GKDESYELLHICEFNSTRKRMSIVFRCPDGKIRLYVKGADTVI 683


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 132 NINNEISIHRLNSEQKKIIRHTSPTYTNGDRNPIEQNSMGIPKNSSPILDPHKTTDVSTK 191
           ++ ++ISI  ++S+ K++I+   PT  + DR  I + +   P+   PI       D+S  
Sbjct: 419 SLTSQISIKDIDSKNKQVIKLFKPT-KSSDRQEIFELAQFEPRQKFPIDTNSSKCDMSAS 477

Query: 192 S 192
           +
Sbjct: 478 T 478


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 163 NPIEQNSMGIPKNSSPILDPHKTTDVSTKSSPIAVVADGEVMVLDENDDWKGLRTEPDPS 222
           N ++     I    S  LD +  T +  K    +   D E +  +E+DD+  + T     
Sbjct: 311 NEVQDTKTDITSEKSA-LDAYYAT-LRAKQKEESEFMDSENVDDEEDDDFLDVTTATSLQ 368

Query: 223 DNDIDM-SVKRTIDHIKNGDSDMLNNKSE 250
           +   D  SVKR  +++ N DSD+ N +++
Sbjct: 369 NKSTDYGSVKRKTENL-NSDSDIQNKRTK 396


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 497 RVSIMENELSEMKVQ-MDASRAGVVTK-LPLVEDGLSSGHASDNDNNNQMQQTHSVVITE 554
           R+++ E++L  + VQ +        T+ L ++  G+ S   +    N Q  ++HS+ + E
Sbjct: 151 RLTVHEDKLQGVYVQGLKTIYVSSETEALDILNKGMGSRAVASTSMNAQSSRSHSIFVLE 210

Query: 555 IVENGTST 562
           +V+  T +
Sbjct: 211 VVQTDTES 218


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/26 (34%), Positives = 19/26 (73%)

Query: 107 NNTHKHNLRNKVRSLGKDTIDHGVDN 132
           +N HK N +++++S G   +D+GV++
Sbjct: 14  SNIHKSNKKHEIQSAGTVALDNGVES 39


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 362 PVQTQLNANDEVVNFQDLDYELKRQTQECPSENGMDGSESEWPQ--VTEPLDSP---HTV 416
           P+Q  L+ ++    F+     +  + Q   S   +D S+SE+ +  +  P + P    ++
Sbjct: 581 PLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVD-SQSEYKESSILAPSNPPFETESI 639

Query: 417 NNHTNFLGLQQQRSVYTEPIVHGLTAEGAWSGSGSPGARRLPFALSTDSSETGSEMSLMP 476
            + T   G+++  +     + +  TA      S S        +   D +E GSE++   
Sbjct: 640 TDSTEIEGIKESFASTDTGLQNNSTATSENKRSESELTMSNVLSNEGDRNEEGSEINSSQ 699

Query: 477 VDTQLSDVKGLGIRTQNSETRVSIMENEL 505
             T       + I ++N ET VS++  ++
Sbjct: 700 PSTINHGTDHINIVSENKETTVSLLHGDV 728


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 205 VLDENDDWKGLRTEPDPSDNDIDMSVKRTIDHIKNGDSDMLNNK-SEMSCDGASDSSRSG 263
           V DE DD + L +E +  DN  D+        +++GD+  ++++  +     AS++ RS 
Sbjct: 349 VADEEDDGEDLESEDEEVDNSDDI--------VEDGDNAFVDDEDDDKDSVNASNTHRSS 400

Query: 264 EDMRNVSPSGVWMS 277
             +  +    VW S
Sbjct: 401 GPLEVIVEGPVWDS 414


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,329
Number of Sequences: 5004
Number of extensions: 127470
Number of successful extensions: 367
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 33
length of query: 610
length of database: 2,362,478
effective HSP length: 77
effective length of query: 533
effective length of database: 1,977,170
effective search space: 1053831610
effective search space used: 1053831610
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)