GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002731-TA|BGIBMGA002731-PA|undefined
         (610 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    26   2.5  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   4.4  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   4.4  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   4.4  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   5.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   7.7  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 260  SRSGEDMRNVSPSGVWMSGDEDKGRVTRVIGELPIAEYEGSPRRYGVGT 308
            +R    MR+ SP G  +S  + +G      G  PIA Y+ +P   G  T
Sbjct: 1138 ARELASMRSFSPYGADVSRGDHRGGAAFYAGAAPIAAYQ-APSVAGTAT 1185


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 29  PKCRPKNMQHQHDRLNSGLEARDANNASSDEER 61
           P+C P   +H ++  N     R+A N +    R
Sbjct: 203 PRCYPMPPEHMYNMFNFNRNGREARNRAEKNRR 235


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 200 DGEVMVLDENDDWKGLRTEPDPSDNDIDMS 229
           +GE    DE D+++G  TE D  D D +++
Sbjct: 479 EGEEDEEDEEDEYEGDDTEEDEEDEDDELA 508


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 280 EDKGRVTRVIGELPIAEYEGSPRRYGVGTQKTTRSPRPGFPQRV 323
           EDK ++T+V G++   E E     Y  G+ +T    R    Q V
Sbjct: 446 EDKRKLTKVEGQIGQLERELQSTGYEEGSMETLAGRRQALQQEV 489


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 310 KTTRSPRPGFPQRVVTESRDITPPGSSTAFDYLYEFSETRKVLEE 354
           +T   P P   QR+V   +   PPGS+ ++  L       KVLE+
Sbjct: 528 ETATFPAPWKRQRLVLLPKPGKPPGSNGSYRPLCMLDALGKVLEK 572


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 321 QRVVTESRDITPPGSSTAFDYLYEFSETRKVLEE 354
           QR+V  S+   PPG S+++  L       KVLE+
Sbjct: 486 QRLVLLSKTGKPPGESSSYRPLSMLDALGKVLEQ 519


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,235
Number of Sequences: 2123
Number of extensions: 27193
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 6
length of query: 610
length of database: 516,269
effective HSP length: 68
effective length of query: 542
effective length of database: 371,905
effective search space: 201572510
effective search space used: 201572510
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)