Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002730-TA|BGIBMGA002730-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 48 2e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 42 1e-04
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 36 0.009
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 31 0.15
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.79
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 27 2.4
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 2.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.6
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 26 7.3
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 9.7
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/144 (20%), Positives = 65/144 (45%)
Query: 28 LKTVRLETAMVIGSGRGVGRQIAMQLADLGAIVLCIDINHQNNEDTVDHIKLRGGSAASY 87
L +++ + +V G+ +G+G IA A G V+ + E + G +
Sbjct: 16 LFSLKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTL 75
Query: 88 ICDVTRREKIEELAAQIKKDVGFVSMLFYCCGIPSPRSLMTQPPQDIHKTLDLTLTSYFW 147
D++R + +E +I+K + ++ G+P RS++ PP + K +++ S +
Sbjct: 76 KIDISRSDTVEAGVEEIQKIFKEIHVVVANAGMPFRRSVLDSPPHEFEKVMNINTNSVYR 135
Query: 148 LIDNFLPEMKTRDHGHIVALTSVA 171
+ K + G+++A S++
Sbjct: 136 VAYYMGKIFKKQGFGNLIATASMS 159
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 41.5 bits (93), Expect = 1e-04
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 35 TAMVIGSGRGVGRQIA-MQLADLGAIVLCIDINHQNNEDTVDHIKLRGGSAASYICDVTR 93
T ++ GS +G+G + + LA ++ C + + T++H KL DVT
Sbjct: 7 TVLITGSSKGLGYALVKVGLAQGYNVIAC---SRAPDTITIEHSKL-----LKLKLDVTD 58
Query: 94 REKIEELAAQIKKDVGFVSMLFYCCGIPSPRSLMTQPPQDIHKTLDLTLTSYFWLIDNFL 153
+ +E K+ G V ++ G + +++H+ +++ ++ L
Sbjct: 59 VKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEAL 118
Query: 154 PEMKTRDHG-HIVALTSVAGLSYIKDKMPLSVAQFAVQGLAESLMEDLRINKIDNVHVTL 212
M+ G I+ ++SVAG + ++FAV+GL++++M +L N N+ +T+
Sbjct: 119 NLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNW--NIAITI 176
Query: 213 I 213
+
Sbjct: 177 V 177
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 35.5 bits (78), Expect = 0.009
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 30 TVRLETAMVIGSGRGVGRQIAMQLADLGAIVLCIDINHQNNEDTVDHIKLRGGSAASYIC 89
TV ++ G+ G+G+ + +LG V IDI VD K++ +A +
Sbjct: 2 TVEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDI--------VDPSKVQ-DAALALQA 52
Query: 90 DVTRREKIEELAAQIKKDVGFVSMLFYCCGIPSPRSLMTQPPQDIHKTLDLTLTSYFWLI 149
DV++ ++IE ++ + +G + +L G+ + + L L +
Sbjct: 53 DVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQ 112
Query: 150 DNFLPEM-KTRDHGHIVALTSVAGLSYIKDKMPLSVAQFAVQGLAESL 196
+P M K G IV + SV G Y+ S A+ ++ L ++L
Sbjct: 113 RYVIPHMAKQGKGGSIVNIGSVNGHIYL-GSPAYSAAKAGLENLTKAL 159
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 37 MVIGSGRGVGRQIAMQLADLGAIVLCIDINHQNNEDTVDHI---KLRGGSAASY--ICDV 91
MV G G+G+ + +LA LGA V+ + + + ++ TVD+I + R + Y +CD+
Sbjct: 79 MVTGGSSGIGQVVVEKLASLGAQVVIL-LRTEPDQFTVDYIMDLRKRTKNQLIYTEVCDL 137
Query: 92 TRREKIEELAAQ--IKKDVGFVSMLFYCCGIPSPRSLMTQPPQD 133
+ + + A + + + M+ C G+ P + Q ++
Sbjct: 138 SSMLSVRKFATKWIDCTPIRRLDMIVLCSGVLLPPFMDRQTTEE 181
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 29.1 bits (62), Expect = 0.79
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 120 IPSPRSLMTQPPQDIHKTLDLTLTSYFWLIDNFLPEMKTRDHGHIVALTSVAGLSYIKDK 179
I +P S Q P D ++ + + Y +I +FL D V ++ GL+ I +
Sbjct: 289 ISNPDSFF-QLPDDSNEEVHI----YLEVIVDFLLS-SVSDIDSFVRWSAAKGLAKIISR 342
Query: 180 MPLSVAQFAVQGLAESLMEDLRINKIDN 207
+P ++A+ + + E + E++ +N I+N
Sbjct: 343 LPWNLAEQVIDAIIELMTENMFLNPIEN 370
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 175 YIKDKMPLSVAQFAV--QGLAESLMEDLRINKIDNVHVTLIHIYPFIVN 221
Y+ ++P S+A+ A+ + L ES++ED I + + L+HI +VN
Sbjct: 65 YVNGRIP-SLAEEALPSESLLESIVEDPSIKNLIESNAELLHIMKELVN 112
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 216 YPFIVNDEYHDVKLRIPSYFGTISPVEAASSIL--DSVRR-NYPEASV 260
YP HD L IPS GTI + ++ I+ DS+R + PE S+
Sbjct: 295 YPDDAESFMHDAYLLIPSEDGTIQITDPSTKIIIDDSIRHSDDPETSL 342
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 138 LDLTLTSYFWLIDNFLPEMKT 158
LD+T+ +F DNF PE+ T
Sbjct: 1238 LDITIRKHFPQFDNFSPELST 1258
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 200 LRINKIDNVHVTLIHIYPFIVNDEYHDVKLRIPSYFGTISPVEAASSILDS 250
LR N I + H++L IY + + D+KL + Y I V S I DS
Sbjct: 207 LRGNNI-SAHISLATIYQYGTPGKLKDIKLAVKHYLAAIRLVN--SGIPDS 254
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 193 AESLMEDLRINKIDNVHVTLIHIYPFIVNDEYHDVKLRIPSYFGTISPVEAASSILDSVR 252
A + +++++K+ N H +IH Y N ++ V L +E I + V
Sbjct: 55 ARRMASEIQLHKLCNGHKNIIHFYNTAENPQWRWVVLEFAQGGDLFDKIEPDVGIDEDVA 114
Query: 253 RNY 255
+ Y
Sbjct: 115 QFY 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,850
Number of Sequences: 5004
Number of extensions: 48187
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 10
length of query: 293
length of database: 2,362,478
effective HSP length: 72
effective length of query: 221
effective length of database: 2,002,190
effective search space: 442483990
effective search space used: 442483990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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