GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002729-TA|BGIBMGA002729-PA|IPR003439|ABC transporter
related
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.58 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    28   1.8  
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    27   3.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   4.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   4.1  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   5.4  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   5.4  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   5.4  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   5.4  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   5.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.2  

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 53  LAGHLMPSRGQLQCMSQWSLKRQPHLYCQQIAISCSEVSLPTWMTAYDALELIGTLRGVP 112
           + G LMPSR       +WS +    L+ +  + S   V  P ++TA   +E I T+   P
Sbjct: 277 ILGRLMPSRAFGDARYKWSQEISERLHREYFSASPIPVKTPPYVTAVPEIESI-TVN--P 333

Query: 113 KDH 115
           K H
Sbjct: 334 KKH 336


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 31  RKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQLQCMSQWS 71
           R G+++ L G    G+ T  ++L+G + P+ G+      W+
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWA 141


>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 137 VDSLVDRYSQKGYTVVVHLKDDVDVTKM--FGNYFDNFIINDTSEVLVNVQILDSLNWME 194
           + +L DR  ++  T  +H +  + ++      + F  F +   S+ +V V+I   L   E
Sbjct: 57  IRALEDRRDEQMKTKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNIVVVKIDSKLTEEE 116

Query: 195 VFDRMEKLKTNNVQVYSYVVTEIPIDF 221
            F+R++KL   N   +S    +  IDF
Sbjct: 117 EFERLDKLVEGNRVEFSDEELQKLIDF 143


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 110 GVPKDHIKRQLNDLIEALDGTTYDIGTVDSLVDRYSQKGYTVVVHLKDDV------DVTK 163
           G+P D   +Q++D+  A       I  +  +V   +Q G+T   H   DV      +VT+
Sbjct: 413 GIP-DPNPKQIHDIYVARHNIFNLINVLSDIVSVEAQIGWTTHGHTAVDVNVYGVGEVTE 471

Query: 164 MFGNYFDNFIINDTSEVLVNVQILD 188
                 +N  I    E+ +NV + D
Sbjct: 472 HLRGNMENIEIGQFMEIYLNVSLSD 496


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/80 (22%), Positives = 37/80 (46%)

Query: 175 NDTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVTEIPIDFIYNSILSKEQGNR 234
           ND    +  VQ L +   +E+ D + KL T +  +       +P+  ++N   +++Q  R
Sbjct: 204 NDLVRRVFAVQQLINCKKLEIEDIVNKLPTGSNHMVEETFLSLPVITVFNGKKNRKQRFR 263

Query: 235 VVEDLFSYSWLKTILPRKLK 254
           +     S ++L   L + +K
Sbjct: 264 IRSWRSSLNFLVKELDKSIK 283


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 133 DIGTVDSLVDRYSQKGYTVVVHLKDDVDVTKMFGNYFDN-FIINDTSEVLVNV 184
           ++G V ++V R    G   ++H+KD +D  + F     N F+I +T +  +++
Sbjct: 188 NMGRVGTIVHREHHLGSFEIIHVKDALD--REFATRLSNVFVIGETGKSWISL 238


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 178 SEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVTEIPIDFIYNSILSKEQGNRVVE 237
           SE++V+V  LD ++W E  DR +++K N V  +   +       ++   +S   G  +++
Sbjct: 316 SEIVVSVNKLDLMSWSE--DRFQEIK-NIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372

Query: 238 DLFS--YSWLK 246
              S  Y W K
Sbjct: 373 KDSSDLYKWYK 383


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 153 VHLKDDVDVTKMFGNYFDNFIINDTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSY 212
           V + D  D  +  GN  D   +    + L+  QI  ++ ++    ++E+  T NV VY+ 
Sbjct: 103 VEMVDTADQFQNIGNKEDELRVQKEIQALIR-QITATVTFLP---QLEEQCTFNVLVYAD 158

Query: 213 VVTEIPIDFI 222
             +E+P D++
Sbjct: 159 KDSEVPTDWV 168


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/102 (22%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 179 EVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVT-EIPIDFIYNS-ILSKEQGNRVV 236
           E  +N+Q++ ++N  ++  + ++LK  N +  +++ +     D   N  I  +EQ  ++ 
Sbjct: 46  EEQINLQLVYAIN--DLRSKTKELKAENEKEDTFLNSFNASGDLTANKKIQLREQSRKLE 103

Query: 237 EDLFSYSWLKTILPRKLKRSPSQRALQALSAFEPKYAINTLK 278
           E L SY      + ++ + + S+  L  LSA + +  +N L+
Sbjct: 104 ESLLSYHKKVKEMEKQHRSASSKLELAKLSAQQLQTNVNVLR 145


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 51  QVLAGHLMPSRGQLQCMSQWSLKRQPHLYCQQIAISCSEVSLPTWMTAYDALELIGTLR 109
           Q+L  + +PS+ Q+      SL+   HLY Q+ +IS + +   +   A  A++L  ++R
Sbjct: 311 QLLENNFVPSKNQVGLEPLPSLEALQHLY-QEDSISLNHIEHDSDSLAEAAMQLTQSMR 368


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 133 DIGTVDSLVDRYSQKGYTVVVHLKDDVDVTKMFGNYFDN-FIINDTSEVLVNV 184
           ++G V ++V R    G   ++H+KD +D  + F     N F+I +T +  +++
Sbjct: 188 NMGRVGTIVHREHHLGSFEIIHVKDALD--REFATRLSNVFVIGETGKSWISL 238


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 253 LKRSPSQRALQALSAFEPKYAINTLKELPWSVI 285
           +K +   RA + LS F+ ++  N +KE+ W ++
Sbjct: 85  IKEAYVVRAHRILSIFQEQFIENVVKEINWEIL 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,688
Number of Sequences: 5004
Number of extensions: 57724
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 13
length of query: 288
length of database: 2,362,478
effective HSP length: 72
effective length of query: 216
effective length of database: 2,002,190
effective search space: 432473040
effective search space used: 432473040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)