Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002729-TA|BGIBMGA002729-PA|IPR003439|ABC transporter
related
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 36 0.050
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 35 0.066
06_03_0179 - 17604561-17606435 34 0.12
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 31 1.4
04_04_1232 - 31956286-31956463,31957822-31957880,31959343-319593... 29 3.3
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 29 4.3
08_01_0199 + 1628158-1629192 29 4.3
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 29 5.7
01_03_0182 + 13537522-13539699 29 5.7
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050... 28 7.6
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 28 7.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 7.6
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 28 7.6
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 28 7.6
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 16 KMSGYYVVHNVYLGMRKGEIVALSGLKRHGRLTFCQVLAGH 56
K +G ++ V L +R+GEI AL G G+ T +VLAGH
Sbjct: 74 KENGQEILSGVNLTIREGEIHALMGQNGSGKSTLMKVLAGH 114
>02_03_0226 -
16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 35.1 bits (77), Expect = 0.066
Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 6/143 (4%)
Query: 18 SGYYVVHNVYLGMRKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQLQCMSQWSLKRQPH 77
S + VHN IV H + + G+ R + SL R+
Sbjct: 150 SADFTVHNSGCENHYDPIVTSGNQNTHSPMHESGIFQGN---DRNECDHDDDISLARRDK 206
Query: 78 LYCQQIAISCSEVSLPTWMTAYDALELIGTLRGVPKDHIKRQLNDLIEALDGTTYDIGTV 137
+ IA+ C E S P+ + LE G VP + + T+D +
Sbjct: 207 PCAESIALECPEGSSPSLLNPKPCLEATGD---VPSTSSLQTEHSTYHRTRSCTFDDDDM 263
Query: 138 DSLVDRYSQKGYTVVVHLKDDVD 160
DS +D S Y + V L DD D
Sbjct: 264 DSFMDDDSDDEYYMFVGLGDDED 286
>06_03_0179 - 17604561-17606435
Length = 624
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 21 YVVHNVYLGMRKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQL 64
Y++ +V L R GEI+A+ G G+ T +LA P+ G+L
Sbjct: 77 YILRDVSLTARPGEILAVVGPSGAGKSTLLDILAARTAPTHGRL 120
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 31 RKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQLQCMSQW 70
R G+++ L G G+ T +VLAG L P+ G+ + W
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFKNPPDW 140
>04_04_1232 -
31956286-31956463,31957822-31957880,31959343-31959385,
31959599-31959679,31959779-31959890,31960764-31960824,
31961853-31962518
Length = 399
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 8 LLALNVTKKMSGYYVVHNVYLGMRKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQL 64
LL V+ + V+ ++ + + + + L+G G+ TF ++LAG PS G++
Sbjct: 11 LLLNGVSCMRNAQAVLRDINVSVHERTALVLTGANGSGKSTFLRMLAGFSRPSAGEV 67
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 13 VTKKMSGYYVVHNVYLGMRKGEIVALSGLKRHGRLTFCQVLAGHLMPSRG 62
+ K G V+ +V +++GE V L G+ G+ T +++AG P G
Sbjct: 96 IAKSYKGVTVLRDVSWEVQRGEKVGLVGVNGAGKTTQLRIIAGLEDPDAG 145
>08_01_0199 + 1628158-1629192
Length = 344
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 100 DALELIGTLRGVPKDHIKRQLNDLIEALDGTTYDIGTVDSLVDRYSQKGYTVVVHLKDDV 159
D L GVP + R L +L+E DG D+ T D ++ + +V+ ++ V
Sbjct: 167 DTAAAASPLAGVPAPDLSRHLGELLERADGVGADV-TFDVRGQPFA--AHRIVLAMRSPV 223
Query: 160 DVTKMFGN 167
+ ++G+
Sbjct: 224 FMASLYGS 231
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 31 RKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQLQCMSQWSLKRQPHLYCQQIAISCSEV 90
RK ++VA+ G G+ T ++ L GQ +C + S+ R+P++ +I C
Sbjct: 198 RKLKLVAIVGPGGIGKTTLANLVYQKL---HGQFECQAFVSVSRKPNIKVVLSSILCQVS 254
Query: 91 SLP-TWMTAYDALELIGTLRGVPKD 114
L +++ E+I +R + KD
Sbjct: 255 QLKYENFSSWGEKEIIDKIRDILKD 279
>01_03_0182 + 13537522-13539699
Length = 725
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 159 VDVTKMFGNYFDNFIINDTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVTEIP 218
VDV + NY ++N S + +N + S+ E RM + +TN++ +
Sbjct: 563 VDVCRKLSNYMIYLLVNHPSMLPLNTSAISSIKTAE---RMFQRRTNDISDVEHYKN--- 616
Query: 219 IDFIYNSILSKEQ--GNRVVEDLFSYSWLKTIL 249
I++S+L +Q G+ V+++L W++ +L
Sbjct: 617 ---IHDSLLVGDQPEGDGVLDELVE-MWVRVLL 645
>08_02_1581 -
28004060-28004449,28004730-28004888,28004933-28005044,
28005160-28005236,28005525-28006076
Length = 429
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 86 SCSEVSLPTWMTAYDALELIGTLRGVPKDHIKRQLNDLIEALDGTTYDIGTVDSLVDRYS 145
S +E+S T + ++ + ++ G ++++ ++NDL +AL + D + L +
Sbjct: 166 SATEIST-TGRESDQGVDSLTSVVGKTMENMQNEINDLRQALHKSRSDCDRLQLLAAEQA 224
Query: 146 QKGYTVVVHLKD 157
QK +H+KD
Sbjct: 225 QKIVKYELHIKD 236
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 163 KMFGNYFDNFIINDTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVT 215
KMF +D++ N + + + V SL + E FD+M+ N +V Y V+
Sbjct: 231 KMFFEKYDDYKFNGLAWLFLGVPTSSSLLYKEEFDKMKAKAPENFRV-DYAVS 282
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 94 TWMTAYDALELIGTLRGVPKDHIKRQLNDL 123
TW+T YD L+G R P+ IK L
Sbjct: 4914 TWVTEYDLYGLLGVERSSPQSEIKAAYRSL 4943
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 31 RKGEIVALSGLKRHGRLTFCQVLAGHLMPSRGQLQCMSQW 70
R G+++ L G G+ T ++LAG + P+ G+ W
Sbjct: 105 RPGQVLGLVGTNGIGKSTALKILAGKVKPNLGKFTDPPNW 144
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 81 QQIAISCSEVSLPTWMTAYDALELIGTLRGVPKDHIKRQLNDLIEALDGTTYDIGTVDSL 140
+ IA+ C E S+P + LE G VP + + + T++ +DS
Sbjct: 207 ESIALECPEGSIPLLLNPTPCLETTG---DVPSTSSLQTEHAVDHQARSCTFNDDDMDSF 263
Query: 141 VDRYSQKGYTVVVHLKDDVD 160
+D S Y + L DD D
Sbjct: 264 MDDDSDDEYYMFAGLGDDED 283
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,661
Number of Sequences: 37544
Number of extensions: 329600
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 15
length of query: 288
length of database: 14,793,348
effective HSP length: 81
effective length of query: 207
effective length of database: 11,752,284
effective search space: 2432722788
effective search space used: 2432722788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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