GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002729-TA|BGIBMGA002729-PA|IPR003439|ABC transporter
related
         (288 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.44 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           25   0.78 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.2  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 114 DHIKRQLNDLIEALDGTTYDIGTVDSLVDRYSQKGYTVVVHLKDDVDVTKM----FGNYF 169
           DH +  LN+ +            + +   R + K +T  + +  D +V  M     G  +
Sbjct: 463 DHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKY 522

Query: 170 DNFIIN-DTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVTEIPIDFIYNSILS 228
           D F    D     +N   +D    + +      ++ N+ +    V  E+P D +YN ++ 
Sbjct: 523 DEFGHEVDLVHNYMNFMQMDEFV-VNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVV 581

Query: 229 KEQGNRVVE-DLFSYSW-LKTILPRKLKRSPSQRALQALSAFE 269
            E G+   +     Y +  + +LP+  K       L  +S F+
Sbjct: 582 SEDGSETFKYSSQPYGFPERLLLPKGKKEGMPYNVLVVVSPFD 624


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 160 DVTKMFGNYFDNFIINDTSEVLVNVQILDSLNWMEVFDRMEKLKTNNVQVYSYVVTEIPI 219
           ++TK+   + +  I+  +   L   + +    ++   DR+ + K   V V+    T+  +
Sbjct: 42  ELTKLVQGFEEQDILTSSGVTLAGNRYI----YLSGTDRVIRAKLGKVGVHCMKTTQAVV 97

Query: 220 DFIYNSILSKEQGNRVVEDLFSY 242
             +Y   +  +Q   VVE L  Y
Sbjct: 98  VSLYEDPIQPQQAASVVEKLGDY 120


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 34  EIVALSGLKRHGRLTFCQVLAGHLMPSR 61
           E+  LS   +   +TFC+V   HLM +R
Sbjct: 196 ELETLSVEPKVSPMTFCRVFPFHLMFNR 223


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 34  EIVALSGLKRHGRLTFCQVLAGHLMPSR 61
           E+  LS   +   +TFC+V   HLM +R
Sbjct: 196 ELETLSVEPKVSPMTFCRVFPFHLMFNR 223


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 167 NYFDNFIINDTSEVLVNVQILDSLNWMEV 195
           +YF   +  DT + +  V ++ S NW  V
Sbjct: 113 DYFARTVPPDTFQSIALVDVVKSANWSYV 141


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 170 DNFIINDTSEVLVNVQILDSLNWMEVFD 197
           D  I N T  + V +Q  + L+W ++FD
Sbjct: 86  DILINNATINIDVTLQNDEVLDWKKIFD 113


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 270 PKYAINTLKELPW 282
           PKY +   K LPW
Sbjct: 333 PKYRLELQKRLPW 345


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 167 NYFDNFIINDTSEVLVNVQILDSLNWMEV 195
           +YF   +  DT + +  V ++ S NW  V
Sbjct: 203 DYFARTVPPDTFQSIALVDVVKSANWSYV 231


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,146
Number of Sequences: 429
Number of extensions: 3402
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 288
length of database: 140,377
effective HSP length: 57
effective length of query: 231
effective length of database: 115,924
effective search space: 26778444
effective search space used: 26778444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)