GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002728-TA|BGIBMGA002728-PA|undefined
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    31   0.17 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    31   0.17 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    28   1.6  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    27   3.8  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    27   3.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   8.7  

>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 37   TVQHERIGNLEDYYKAQLCWALALLLEPRIIIIPHFMD--EQAYRAVIIDKIIKYRRYLT 94
            T+  ++  +L    K ++  A AL+  P+I+++       +     V+ + +    +  T
Sbjct: 1250 TLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRT 1309

Query: 95   ILKFSFSSLQLEYADRVFLFDNKILVFGGTPAYMFFKYGREYKL 138
             +  +     ++ AD +F+FD  ++   GT A +  + GR Y+L
Sbjct: 1310 TVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYEL 1353


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 24  IRSRCLLSDCDLETVQHERIGNLEDYYKAQLCWALALLLEPRIIII 69
           I   C L   D E V H RI  L    K +L  A    L P +I++
Sbjct: 882 IEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVL 927


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 215 RRYVFSEPNSTV-SDIGGVVYMAIP-SSESLTEYLVTRAIDSPQQYVNMHAY-GMDVATA 271
           R  +   P+ T+ + +    Y  I  SS  L  +LV   I+     V ++AY G+D+  A
Sbjct: 295 RECIVVTPSVTIDAPVTSYTYRQIDESSNILAHHLVKNGIERGD-VVMVYAYRGVDLVVA 353

Query: 272 ANGVLKIQALYSPLHYDVAAAAK----TLARAYVALLRHYTGKLDAT-IQFTDDPLEL 324
             GVLK  A +S +      A +    ++A+    ++    G L  T +++ +  LEL
Sbjct: 354 VMGVLKAGATFSVIDPAYPPARQIIYLSVAKPRALVVLEDAGVLSPTVVEYVEKSLEL 411


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 116 NKILVFGGTPAYMFFKYGREYKLRLTLRSGGALDTTELLE 155
           N ++V GG  A +  KYG+E  L      GGA  + ELLE
Sbjct: 364 NVVIVGGGDTATVAKKYGKEDALSHVSTGGGA--SLELLE 401


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 193 ENATKFGVIALNISLPDSEEICRRYVFSEPNSTVSD-IGGVVYMAIPS 239
           E  +K+GV+   +  P+SE +  R+V  +P   VS+ I G +Y+  PS
Sbjct: 139 EEPSKYGVV---VHYPNSESLIERFV-EKPVEFVSNRINGGIYILNPS 182


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 62  LEPRIIIIPHFMDEQAYRAVIIDKIIKYRRYLTILKF 98
           L P +III HF++ +A   V +  +  Y     ++ F
Sbjct: 381 LRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSF 417


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,913
Number of Sequences: 5004
Number of extensions: 63351
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 2,362,478
effective HSP length: 73
effective length of query: 262
effective length of database: 1,997,186
effective search space: 523262732
effective search space used: 523262732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)