GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002728-TA|BGIBMGA002728-PA|undefined
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    29   4.0  
02_01_0063 - 451471-451725,451825-451913,452028-452133,452214-45...    29   5.3  
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222...    29   7.0  

>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 51  KAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKIIKYRRYLTILKFSFSSLQLEY- 107
           K +L  A++L+ +P+++ +  P    + A R  + + +   ++   I+  + S  + E+ 
Sbjct: 785 KRRLSVAISLIGDPKVVYMDEPSSGLDPASRKDLWNAVKSAKQDRAIILTTHSMEEAEFL 844

Query: 108 ADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSGGALDTTELLE 155
            DR+ +  N  L   G    +  KYG  Y L +T  +G A +   L++
Sbjct: 845 CDRIGIIANGSLQCIGNSKELKAKYGGSYVLTVTTATGEAEEMRRLVQ 892


>02_01_0063 -
           451471-451725,451825-451913,452028-452133,452214-452342,
           452886-452970,453514-453545
          Length = 231

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 51  KAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKIIKYRRYLTILKFSFSSLQLEY- 107
           K +L  A++L+ +P+++ +  P    + A R  + + +   ++   I+  + S  + E+ 
Sbjct: 68  KRRLSVAISLIGDPKVVYMDEPSSGLDPASRKDLWNAVKSAKQDRAIILTTHSMEEAEFL 127

Query: 108 ADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSGGALDTTELLEKSEEAGATVRAH 167
            DR+ +  N  L   G    +  KYG  Y L +T  +G A +    L +S      +  H
Sbjct: 128 CDRIGIIANGSLQCIGNSKELKAKYGGSYVLTVTTATGEAEEEMRRLVQSISPTMNIVYH 187

Query: 168 L 168
           +
Sbjct: 188 I 188


>01_01_0270 -
           2225250-2225263,2225549-2225732,2225817-2225972,
           2226276-2226374,2226489-2226563,2226682-2226750,
           2226917-2227115,2227492-2227597,2228118-2228526
          Length = 436

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 99  SFSSLQLEYADRVFLFDNKILVFGGTPAYM----FFKYGREYKLRLTLRSGGALDTTELL 154
           +F    +EY  +    DN        P YM    +FK   +Y+    ++   A   TE L
Sbjct: 4   NFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFTEYL 63

Query: 155 EKSEEAGATVRAHLG 169
            ++EE  A +  H+G
Sbjct: 64  RRAEEIRAVLDGHIG 78


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,479
Number of Sequences: 37544
Number of extensions: 376344
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 14,793,348
effective HSP length: 82
effective length of query: 253
effective length of database: 11,714,740
effective search space: 2963829220
effective search space used: 2963829220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)