Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002728-TA|BGIBMGA002728-PA|undefined
(335 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 41 0.001
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 30 2.0
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 30 2.0
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 29 3.5
Z66562-4|CAA91465.1| 258|Caenorhabditis elegans Hypothetical pr... 29 4.7
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 29 4.7
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 29 LLSDCDLETVQHERIGNLEDYYKAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKI 86
LLSD L+ ++E+ NL K +LC +AL+ + ++++ P + R + +
Sbjct: 662 LLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLV 721
Query: 87 IKYRRYLTILKFSFSSLQLE-YADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSG 145
+ + TIL + + E D VF+ + LV GT Y+ K+G Y L + L
Sbjct: 722 EREKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHN 781
Query: 146 G 146
G
Sbjct: 782 G 782
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 29 LLSDCDLETVQHERIGNLEDYYKAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKI 86
LLSD L+ ++E+ NL K +LC +AL+ + ++++ P + R + +
Sbjct: 649 LLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLV 708
Query: 87 IKYRRYLTILKFSFSSLQLE-YADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSG 145
+ + TIL + + E D VF+ + LV GT Y+ K+G Y L + L
Sbjct: 709 EREKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHN 768
Query: 146 G 146
G
Sbjct: 769 G 769
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 29 LLSDCDLETVQHERIGNLEDYYKAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKI 86
LLSD L+ ++E+ NL K +LC +AL+ + ++++ P + R + +
Sbjct: 649 LLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLV 708
Query: 87 IKYRRYLTILKFSFSSLQLE-YADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSG 145
+ + TIL + + E D VF+ + LV GT Y+ K+G Y L + L
Sbjct: 709 EREKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHN 768
Query: 146 G 146
G
Sbjct: 769 G 769
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 29 LLSDCDLETVQHERIGNLEDYYKAQLCWALALLLEPRIIII--PHFMDEQAYRAVIIDKI 86
LLSD L+ ++E+ NL K +LC +AL+ + ++++ P + R + +
Sbjct: 662 LLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLV 721
Query: 87 IKYRRYLTILKFSFSSLQLE-YADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSG 145
+ + TIL + + E D VF+ + LV GT Y+ K+G Y L + L
Sbjct: 722 EREKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHN 781
Query: 146 G 146
G
Sbjct: 782 G 782
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/90 (17%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 36 ETVQHERIGNLEDYYKAQLCWALALLLEPRIIIIPHFMDEQAYRAVII--DKIIKYRRYL 93
+T+Q ++ + ++ ++ A AL L+P ++++ + A + +++ +Y+R L
Sbjct: 217 KTMQMKKCKDFSGGWRMRIALARALFLKPSVLLLDEPTNHLDLEACVWLEEELAQYKRTL 276
Query: 94 TILKFSFSSLQLEYADRVFLFDNKILVFGG 123
++ S + + + LF +++ +GG
Sbjct: 277 LVVSHSQDFMNGVCTNIIHLFQKQLVYYGG 306
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/90 (17%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 36 ETVQHERIGNLEDYYKAQLCWALALLLEPRIIIIPHFMDEQAYRAVII--DKIIKYRRYL 93
+T+Q ++ + ++ ++ A AL L+P ++++ + A + +++ +Y+R L
Sbjct: 217 KTMQMKKCKDFSGGWRMRIALARALFLKPSVLLLDEPTNHLDLEACVWLEEELAQYKRTL 276
Query: 94 TILKFSFSSLQLEYADRVFLFDNKILVFGG 123
++ S + + + LF +++ +GG
Sbjct: 277 LVVSHSQDFMNGVCTNIIHLFQKQLVYYGG 306
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 197 KFGVIALNISL--PDSEEICRRYVFSEPNSTVSDIGGVVYMAIPSSESLTEYLVTRAIDS 254
KF ALN+S P + +F + ST +DI G + I + R +
Sbjct: 237 KFVDFALNVSYTPPKKRIFVEKKLFEKSISTFTDIPGETHRTISLGNTFVYKYTERNVVD 296
Query: 255 PQQYVNMHAYGMDVATAANGVLKIQALYS 283
++Y +HA + A N V++ + S
Sbjct: 297 VEKYPELHAL-TEEAERPNNVIRCECCSS 324
>Z66562-4|CAA91465.1| 258|Caenorhabditis elegans Hypothetical
protein F42E11.3 protein.
Length = 258
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 72 FMDEQAYRAVIIDKIIKYRRYLTILKFSFSSLQLEY 107
F+ E ++A+ I ++I + L I KFSF +EY
Sbjct: 53 FISEHTFKAIFIIQMITFGAALVIQKFSFMVNSVEY 88
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/90 (17%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 36 ETVQHERIGNLEDYYKAQLCWALALLLEPRIIIIPHFMDEQAYRAVII--DKIIKYRRYL 93
+T+Q ++ + ++ ++ A AL L+P ++++ + A + +++ +Y+R L
Sbjct: 216 KTMQMKKCKDFSGGWRMRIRLARALFLKPSVLLLDEPTNHLDLEACVWLEEELAQYKRTL 275
Query: 94 TILKFSFSSLQLEYADRVFLFDNKILVFGG 123
++ S + + + LF +++ +GG
Sbjct: 276 LVVSHSQDFMNGVCTNIIHLFQKQLVYYGG 305
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
protein F22E10.1 protein.
Length = 1318
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 51 KAQLCWALALLLEPRIIIIPHF---MDEQAYRAVIIDKIIKYRRYLTILKFSFSSLQLEY 107
K ++ A L+ +P+++++ +D Q+ +V+ + + T + + +
Sbjct: 561 KQRVAIARTLIRDPKVLLLDEATSALDAQS-ESVVQSALNNAAKGRTTIMIAHRLSTIRE 619
Query: 108 ADRVFLFDNKILVFGGTPAYMFFKYGREYKLRLTLRSGGALDTTELLEKSEEAGATVRAH 167
AD++ F+N ++V G + GR KL + + D + ++ EE +TV H
Sbjct: 620 ADKIVFFENGVIVESGNHEELVALGGRYAKLVEAQKFKESDDIEDNGDEHEEETSTVGRH 679
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.138 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,981
Number of Sequences: 27539
Number of extensions: 329968
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 12,573,161
effective HSP length: 82
effective length of query: 253
effective length of database: 10,314,963
effective search space: 2609685639
effective search space used: 2609685639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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