GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002728-TA|BGIBMGA002728-PA|undefined
         (335 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   5.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 203 LNISLPDSEEICRRYVFSEPNSTV 226
           L  S  D+EE+C  Y  +EP+  +
Sbjct: 81  LYTSKNDNEEVCGIYFLAEPDQKI 104


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 128 MFFKYGREYKLRLTLRSGGALDTTELLEKSEEAGATVRAHLG 169
           M F Y + Y+  +       L T ++L  S E   T+R H G
Sbjct: 222 MVFTYYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRIHRG 263


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 47  EDYYKAQLCWALALLLEPRIIIIPHFMDEQAYR 79
           E Y K    WA  ++L   ++  P F DE  +R
Sbjct: 87  EPYGKPVDIWACGVILYILLVGYPPFWDEDQHR 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,654
Number of Sequences: 429
Number of extensions: 3687
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 140,377
effective HSP length: 58
effective length of query: 277
effective length of database: 115,495
effective search space: 31992115
effective search space used: 31992115
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)