GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002727-TA|BGIBMGA002727-PA|undefined
         (116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    26   1.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   5.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   5.4  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   7.1  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    23   9.4  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    23   9.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    23   9.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    23   9.4  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 50  VDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRGEYSVLFAERIQHKM 97
           V EL+ K   F +V K    IP+  N  ++   G+YS+L  E + H++
Sbjct: 151 VRELIYKR-GFGKVNKQ--RIPLSDNAIIEAALGKYSILSVEDLIHEI 195


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 41   IKEREKLQEVDELVAKAISFNEVTKSIM 68
            I +R + + V++L  K  S NEV+KS++
Sbjct: 1046 IIQRIRFKAVNDLTGKLHSANEVSKSLL 1073


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 23  LFKSVEGKDKLCKIEAPSIKEREKLQEVDE 52
           L   VE K KLC I   ++  R +L+ VDE
Sbjct: 799 LLAKVEHKIKLCGILKQAVPFRVRLKYVDE 828


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 39  PSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRGEYSVLFAERIQH-KM 97
           P     E     +E + ++  F +  KS+  +P  SN+  + +     +  A R++  K+
Sbjct: 288 PPPSHEESYNPPEEYLKQSSDFPKKYKSLRVVPAYSNLIKEKFERCLDLYLAPRVRRTKL 347

Query: 98  MLTLEDLL 105
            +  E LL
Sbjct: 348 NIDPESLL 355


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 9   QDRAIGGQMSWNSILFKSVEGKDK 32
           +D AI  QM+ N +LF+  + +D+
Sbjct: 376 EDLAINEQMASNEVLFEDRDAEDR 399


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 41  IKEREKLQEVDELVAKAISFNEVTKS-IMGIPVL---SNVTMDLYRGEYSVLFAERIQHK 96
           I+  +K ++ D+  AK +      +S I  I       NV M L RG+ S + A+  +  
Sbjct: 522 IENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKLKRGDKSKIEAQLAECM 581

Query: 97  MMLTLEDLLT 106
             L LED  T
Sbjct: 582 SQLELEDTNT 591


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 16  QMSWNSILFKSVEGKDKLCKIEAPSIKEREKLQEVDELVAKAISFNE 62
           Q+S  S LF S+E       IE+P+I  R K+ E  +L  +  SF E
Sbjct: 702 QLSRES-LFTSLESP--FTDIESPTIVSRRKIVEQRKLRMEKESFQE 745


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/12 (75%), Positives = 12/12 (100%)

Query: 3   LQRTIGQDRAIG 14
           L+RTIG+D+AIG
Sbjct: 720 LKRTIGRDKAIG 731


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,129
Number of Sequences: 5004
Number of extensions: 17020
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 8
length of query: 116
length of database: 2,362,478
effective HSP length: 64
effective length of query: 52
effective length of database: 2,042,222
effective search space: 106195544
effective search space used: 106195544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)