GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002727-TA|BGIBMGA002727-PA|undefined
         (116 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   0.40 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   3.7  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 23   LFKSVEGK-DKLCKIEAPSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLY 81
            L K ++ K D L KI+ P++K  +KL  V E   K  S NE  ++       +    +  
Sbjct: 1006 LAKELQSKLDTLEKIQTPNMKAMQKLDRVTE---KIQSTNEEFEAARKKAKKAKAAFEKV 1062

Query: 82   RGEYSVLFAERIQH 95
            + E   LF     H
Sbjct: 1063 KNERCTLFTNCCNH 1076


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 28  EGKDKLCKIEAPSIKEREKLQEVDELVAKA 57
           +G D+  ++E  + K RE+L+E+   + KA
Sbjct: 953 KGNDERTQLEEEANKLREELEEMKLAIEKA 982


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,028
Number of Sequences: 2123
Number of extensions: 3305
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 116
length of database: 516,269
effective HSP length: 56
effective length of query: 60
effective length of database: 397,381
effective search space: 23842860
effective search space used: 23842860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)