GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002727-TA|BGIBMGA002727-PA|undefined
         (116 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095190-1|AAM12283.1|  283|Drosophila melanogaster LD31229p pro...    30   0.64 
AE014297-926|AAF54370.1|  283|Drosophila melanogaster CG8132-PA ...    30   0.64 
AE014296-1126|AAN12084.1| 1943|Drosophila melanogaster CG32397-P...    29   1.1  

>AY095190-1|AAM12283.1|  283|Drosophila melanogaster LD31229p
           protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 39  PSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRGE 84
           P  K ++   E +E+V   I F+EV +    IPV     +DLY  E
Sbjct: 234 PWAKVQQSASEGEEIVVADIDFSEVEQVRQQIPVFGQRRLDLYATE 279


>AE014297-926|AAF54370.1|  283|Drosophila melanogaster CG8132-PA
           protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 39  PSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRGE 84
           P  K ++   E +E+V   I F+EV +    IPV     +DLY  E
Sbjct: 234 PWAKVQQSASEGEEIVVADIDFSEVEQVRQQIPVFGQRRLDLYATE 279


>AE014296-1126|AAN12084.1| 1943|Drosophila melanogaster CG32397-PA
            protein.
          Length = 1943

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 23   LFKSVEGKDKLCKIEAPSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLY 81
            L K+     K   IEAP  K  ++L+EV+E V KA       K   G P    V +D++
Sbjct: 1795 LVKTTTNSPKGKPIEAPRQKIGKQLREVEENVEKAAVTKATIKLTKGAPSQIIVPVDIH 1853


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,937,539
Number of Sequences: 52641
Number of extensions: 163357
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 3
length of query: 116
length of database: 24,830,863
effective HSP length: 76
effective length of query: 40
effective length of database: 20,830,147
effective search space: 833205880
effective search space used: 833205880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)