GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002727-TA|BGIBMGA002727-PA|undefined
         (116 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z74030-12|CAA98434.1|  320|Caenorhabditis elegans Hypothetical p...    26   5.9  
Z78539-8|CAB01726.2|  560|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U41550-5|AAA83287.3|  421|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 25  KSVEGKDKL-CKIEAPSIKEREKLQEVDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRG 83
           KS E K K+  KIE    +E  KL E  + + KAI  + V ++      L NV MD +  
Sbjct: 99  KSEEVKPKIEAKIEKKVAREETKLMESSDKIDKAIE-SLVAETENQYDPLDNVEMDSWDD 157

Query: 84  E 84
           E
Sbjct: 158 E 158


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 36  IEAPSIKEREKLQEVDELVAKAISFNEVTKSIMGIP 71
           IE    KE  + Q+++++    +SF E+TK ++ +P
Sbjct: 894 IEEARAKEEAEKQKLEDMKNLRLSFIEMTKDVLRLP 929


>AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical
           protein H06I04.3b protein.
          Length = 716

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 25  KSVEGKDKLCKIEAPSIKER---EKLQEVDELVAKA 57
           K+VEG+ K  +IE    +E+     + E+DEL+AKA
Sbjct: 329 KAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKA 364


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 25  KSVEGKDKLCKIEAPSIKER---EKLQEVDELVAKA 57
           K+VEG+ K  +IE    +E+     + E+DEL+AKA
Sbjct: 329 KAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKA 364


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 25  KSVEGKDKLCKIEAPSIKER---EKLQEVDELVAKA 57
           K+VEG+ K  +IE    +E+     + E+DEL+AKA
Sbjct: 329 KAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKA 364


>Z74030-12|CAA98434.1|  320|Caenorhabditis elegans Hypothetical
           protein D1054.14 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 30  KDKLCKIEAPSIKEREKLQEVDEL 53
           +D+ C I+ P +++R  L+EVD L
Sbjct: 154 EDRYCDIQLPRLQKRWALEEVDML 177


>Z78539-8|CAB01726.2|  560|Caenorhabditis elegans Hypothetical
           protein C31E10.5 protein.
          Length = 560

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 50  VDELVAKAISFNEVTKSIMGIPVLSNVTMDLYRGEYSVLFAERIQHKMMLTLEDLLT 106
           VD+++A +   ++V + IM IP+      D YR E     A   QH  M  +ED+LT
Sbjct: 422 VDDIIALSNRISKVVQVIMSIPL-----PDEYRKE-----AMSYQHLFMSYVEDVLT 468


>U41550-5|AAA83287.3|  421|Caenorhabditis elegans Hypothetical
           protein R04A9.7 protein.
          Length = 421

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 23  LFKSVEGKDKLCKIEAPSIKEREKLQEVD 51
           L K +  +D   +I  P IKE E  +E+D
Sbjct: 256 LIKRIIKRDPTLRITIPDIKEHEFFEEID 284


>AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical
           protein Y92H12A.3 protein.
          Length = 249

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 23  LFKSVEGKDKLCKIEAPS--IKEREKLQEVDELVAKAISFNEVTKSIMGIPV 72
           LF  V  KD    I+A    I++ E+ Q+V E+VA+ I        I+G+ V
Sbjct: 68  LFNRVPNKDDTFTIDAMKVLIEDSEQCQKVAEIVAQLIKKLLGNNDIIGLGV 119


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,112
Number of Sequences: 27539
Number of extensions: 88408
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 9
length of query: 116
length of database: 12,573,161
effective HSP length: 72
effective length of query: 44
effective length of database: 10,590,353
effective search space: 465975532
effective search space used: 465975532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)