GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002727-TA|BGIBMGA002727-PA|undefined
         (116 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 11  RAIGGQMSWNSILFKSVEGKDKLCKIEAPSIKEREKLQEVDELVAKAISFNEVTKSIMGI 70
           ++ G  +S N +LF  + G   +  +    + +RE    V +   + +      K +  +
Sbjct: 308 QSFGKVVSKNGVLFLGLVGNSGIACVNEHQVLQRESFDVVAQ-NEETLQMIVSMKIMENL 366

Query: 71  PVLSNVTMDLYRGEYSVLFAERIQ 94
           P    +  D    EY +  + R+Q
Sbjct: 367 PQSGRIN-DPEGNEYMLALSNRMQ 389


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 22  ILFKSVEGKDKLC 34
           +L ++V GK+K C
Sbjct: 376 VLMRTVRGKEKTC 388


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 22  ILFKSVEGKDKLC 34
           +L ++V GK+K C
Sbjct: 376 VLMRTVRGKEKTC 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,280
Number of Sequences: 429
Number of extensions: 1123
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 116
length of database: 140,377
effective HSP length: 50
effective length of query: 66
effective length of database: 118,927
effective search space:  7849182
effective search space used:  7849182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)