GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002726-TA|BGIBMGA002726-PA|undefined
         (191 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       27   0.073
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   0.90 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   4.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.8  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 0.073
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 128 INNTWKLSIRSTDRAKYETSIDHTRFSNPHLRV 160
           I+NTW+ S+R+ D     +SI H   SNP  RV
Sbjct: 269 ISNTWQNSLRAADIQPTLSSIRHPE-SNPSERV 300


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 63  LNRRTIMGYAPNTEPFAAIMGRAAKFLNISFLTASSENGLNDMLF 107
           LNRRTI+G +     F  +M + A +  +S +    +   + +LF
Sbjct: 314 LNRRTILGVSNAVITFLIVMVQKASYEKLSPVVLFIQVAADTVLF 358


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 125 ETKINNTWKLSIRSTDRAKYETSIDHTRFSNP 156
           ET++N   KL + + D A  +    H R   P
Sbjct: 630 ETQVNRFVKLLVATIDEAASDVHQTHMRIRPP 661


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 125 ETKINNTWKLSIRSTDRAKYETSIDHTRFSNP 156
           ET++N   KL + + D A  +    H R   P
Sbjct: 630 ETQVNRFVKLLVATIDEAASDVHQTHMRIRPP 661


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 125 ETKINNTWKLSIRSTDRAKYETSIDHTRFSNP 156
           ET++N   KL + + D A  +    H R   P
Sbjct: 630 ETQVNRFVKLLVATIDEAASDVHQTHMRIRPP 661


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 125 ETKINNTWKLSIRSTDRAKYETSIDHTRFSNP 156
           ET++N   KL + + D A  +    H R   P
Sbjct: 630 ETQVNRFVKLLVATIDEAASDVHQTHMRIRPP 661


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 174 IENAAGSNPNYENY 187
           IEN AG+ P + NY
Sbjct: 7   IENQAGNAPVFNNY 20


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 174 IENAAGSNPNYENY 187
           IEN AG+ P + NY
Sbjct: 27  IENQAGNAPVFNNY 40


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,306
Number of Sequences: 317
Number of extensions: 1759
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 114,650
effective HSP length: 53
effective length of query: 138
effective length of database: 97,849
effective search space: 13503162
effective search space used: 13503162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)