GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002726-TA|BGIBMGA002726-PA|undefined
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    30   0.25 
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    27   1.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.4  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   9.4  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   9.4  

>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 104 DMLFDRVSEAPLDEAVMWIIW 124
           D LFD +S +PL E V WI W
Sbjct: 24  DELFDDLSSSPLHENVSWISW 44


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 88  FLNISFLTASSENGLNDMLFDRVSEAPLDEAVMWIIWETKINNTWKLSIRSTDRAKYET 146
           F +I+FL  S  +  N+ ++D + E P  E   W+       +TWKL        K  T
Sbjct: 126 FPHITFLKESGNSSSNE-IYDSIDEIPPQEIQSWV-------DTWKLLEEKVGEGKIGT 176


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 154  SNPHLRVGFLAVQL-AILQAIIENAAGSNPNYENYDS 189
            S P L + F    L A+L A +E A+ + P+Y N D+
Sbjct: 1622 SEPELCIQFFRCNLEAVLVAFLEAASVNAPDYFNVDA 1658


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 134 LSIRSTDRAKYETSIDHTRFSNPHLRVGF 162
           L ++ST + +  T  + TR  +PH++  F
Sbjct: 25  LRVKSTKKRRSSTKDEETRGMHPHIKSSF 53


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 25  LFAGILFLSAVFIANPVFLTPLQAEPEPPLTAADILV 61
           + AG+ F+S+ F  + +F++P   E    L AA + +
Sbjct: 291 ILAGLQFVSSCFFLSSLFISPSNKESLVILFAAPVFL 327


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,357
Number of Sequences: 5004
Number of extensions: 32576
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 2,362,478
effective HSP length: 69
effective length of query: 122
effective length of database: 2,017,202
effective search space: 246098644
effective search space used: 246098644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)