GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002726-TA|BGIBMGA002726-PA|undefined
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872     31   0.45 
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    28   4.2  
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188...    28   4.2  
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    28   4.2  
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    28   5.5  
11_05_0109 + 19126849-19126917,19129883-19130620                       27   9.6  
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    27   9.6  

>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
          Length = 453

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 143 KYETSIDHTRFSNPHLRVGFLAVQLAILQAIIENAAGSNPNYEN 186
           K+  S+ HT FSNP + +  +A  + ++  +++ A    P Y+N
Sbjct: 409 KWRASLIHTYFSNPWVFISLVAAIILLVATLLQTAYTVVPFYQN 452


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 69  MGYAPNTEPFAAIMGRAAKFLNISFLTASSENGLNDMLFDRVSEAPLDEAVMWIIWETKI 128
           MG  P+   F  +   A KF   +      +  L++M   ++S   +D  +  + W+ ++
Sbjct: 360 MGLMPDCCTFNILSAGAYKFGKAALFVLDQQQ-LHEMFGSQLSTDGIDMLICRLCWDGRL 418

Query: 129 NNTWKL 134
           ++ W+L
Sbjct: 419 DDAWEL 424


>02_05_0553 -
           29918289-29918361,29918505-29918617,29918694-29918801,
           29918991-29919206,29919284-29919559,29919720-29919824,
           29919925-29920379,29920746-29920940,29921237-29921639,
           29922006-29922518
          Length = 818

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 14  RRRWKILLFEGLFAGIL--FLSAV---FIANPVFLTPLQAEPEPPLTAADILVS 62
           R R   L+  G  AGI   F +AV   F A    L PL+AE  PP T A I+++
Sbjct: 288 RERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILA 341


>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 115 LDEAVMWIIWETKINNTWKLSIRST-DRAKYETSID 149
           LD  V  ++ E + NN W L+I  T D+ K  TS+D
Sbjct: 319 LDAEVSPLVAELEENNAWALAIVGTGDQTKASTSLD 354


>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 14  RRRWKILLFEGLFAGIL--FLSAV---FIANPVFLTPLQAEPEPPLTAADILVS 62
           R R   L+  G  AGI   F +AV   F A    L PL+AE  PP T A I+++
Sbjct: 227 RERRIALVAAGSAAGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILA 280


>11_05_0109 + 19126849-19126917,19129883-19130620
          Length = 268

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 143 KYETSIDHTRFSNPHLRVGFLAVQLAILQAIIENAAGSNPNY 184
           K+  ++ HT FSNP + +  LA  + +L  +++      P Y
Sbjct: 225 KWRATLMHTYFSNPWVFISLLAAIILLLATLMQTIYTVVPFY 266


>05_05_0136 -
           22631260-22631325,22631735-22631821,22631898-22632026,
           22632122-22632190,22632271-22632351,22632598-22632702,
           22632786-22633016,22633098-22634272,22634391-22634457,
           22636705-22637778,22638119-22638274,22638827-22638985,
           22639062-22639220,22639306-22639422,22639502-22639612,
           22639690-22640358
          Length = 1484

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 74  NTEPFAAIMGRAAKFLNISFLTASSENGLNDML 106
           NTE F A++ R   F  ISF  +  E G  DML
Sbjct: 659 NTEHFLAVLKRFQSFTQISF--SRMEQGWGDML 689


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,195,755
Number of Sequences: 37544
Number of extensions: 185272
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 14,793,348
effective HSP length: 78
effective length of query: 113
effective length of database: 11,864,916
effective search space: 1340735508
effective search space used: 1340735508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)