GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002726-TA|BGIBMGA002726-PA|undefined
         (191 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z81565-3|CAH60773.1|  489|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81565-2|CAB04581.1|  507|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z77661-12|CAB01191.1|  381|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z77658-12|CAB01162.1|  381|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
          protein Y49E10.10 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 31 FLSAVFIANPVFLTPLQAEPEPPLTAAD 58
          FL   F+  P  L  L A+P  PLTAAD
Sbjct: 4  FLLCQFLLLPFLLHHLNAQPNDPLTAAD 31


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 62  SLNRRTIMGYAPNTEPFAAIMGRAAK-------FLNISFLTASSENGLNDMLFD 108
           +LN   I   APN E +A   G A+K       FL+  F+ +SS+N  +D   D
Sbjct: 108 TLNDGLITTQAPNPEEYALQSGTASKGKSIGSLFLSFHFMPSSSDNSPSDSTAD 161


>Z81565-3|CAH60773.1|  489|Caenorhabditis elegans Hypothetical
           protein K06G5.1b protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 51  EPPLTAADILVSLNRRTIMGYAPNTEPFAAIMGRAAKFLNISFLT 95
           +P L + DIL+ +N+RT  G    ++  AA+   A  F+N+  +T
Sbjct: 174 DPQLISHDILIMVNQRTTQG----SDGLAALNSLAKSFVNLLSVT 214


>Z81565-2|CAB04581.1|  507|Caenorhabditis elegans Hypothetical
           protein K06G5.1a protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 51  EPPLTAADILVSLNRRTIMGYAPNTEPFAAIMGRAAKFLNISFLT 95
           +P L + DIL+ +N+RT  G    ++  AA+   A  F+N+  +T
Sbjct: 174 DPQLISHDILIMVNQRTTQG----SDGLAALNSLAKSFVNLLSVT 214


>Z77661-12|CAB01191.1|  381|Caenorhabditis elegans Hypothetical
          protein F40G12.11 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 44 TPLQAEPEPPLTAADILVSLNRRTIMGYAPNTE 76
          T  QAE +P   +AD  V+L+R T +G++P  E
Sbjct: 62 TSNQAEQDPS-KSADQFVTLSRPTTLGFSPTFE 93


>Z77658-12|CAB01162.1|  381|Caenorhabditis elegans Hypothetical
          protein F40G12.11 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 44 TPLQAEPEPPLTAADILVSLNRRTIMGYAPNTE 76
          T  QAE +P   +AD  V+L+R T +G++P  E
Sbjct: 62 TSNQAEQDPS-KSADQFVTLSRPTTLGFSPTFE 93


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,529,691
Number of Sequences: 27539
Number of extensions: 166174
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 6
length of query: 191
length of database: 12,573,161
effective HSP length: 77
effective length of query: 114
effective length of database: 10,452,658
effective search space: 1191603012
effective search space used: 1191603012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)