Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002725-TA|BGIBMGA002725-PA|undefined
(251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.64
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.0
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.6
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 7.9
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 122 AECKTESSPSGESIVAISTSDTNGDSFATRTNDGSRKRIAQSISVASSGKT 172
AE K S + A +SDTN DS ND S QS VAS G++
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDAS----LQSAGVASDGES 522
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 127 ESSPSGESIVAISTSDTNGDSFATRTNDGSRKRIAQSISVASSGKTGTGR 176
E+ P+G + T++ NG+ + RT K+ ++S KT TG+
Sbjct: 533 EALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGK 582
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 54 FPSDVF-ELRSLLSARAMTAGVSRSEWEYTPLYDVTRPFLEEIPATLETPPPPVLV 108
FP+ + L +LLS+ T + RS+ T +Y L P TL+ PPPVLV
Sbjct: 423 FPNSLSPSLLALLSSPYFTKWIERSD---TVMYREILKLL--FPMTLQVVPPPVLV 473
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 64 LLSARAMTAGVSRS--EWEYTPLYDVTRPFLEEIPATLETPPPPVLVWIAWA-SWRSIFT 120
LL+A+++ +GVS S + TP PAT + P +L + ++ +
Sbjct: 11 LLAAQSLNSGVSASLSDPANTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNYNTSSA 70
Query: 121 WAECKTESSPSGESIVA---ISTSDTNGDSFATRTNDGSRKRIAQSISVASSGKTGT 174
+ T SS + S+ + +++S TN + A+ T+ A S S+ASS T +
Sbjct: 71 SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSS 127
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 40 LVNSLSISLVIYKGFPSDVFELRSLLSARAMTAGVSRSEWEYTPLYDVTRPFLEEIPATL 99
L + + +L +++ P +V L LLS + A SRS L + T P I TL
Sbjct: 26 LTDGKARALTVFESLPLEVLRLIFLLSNNSNLAVTSRSLRHRLSLRNNT-PIFMPIDFTL 84
Query: 100 ETPPPPVLVWIAWASWRSIFT 120
P +++ I R FT
Sbjct: 85 SMVPKSIILSIQRGLLRRYFT 105
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.1 bits (57), Expect = 2.6
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 39 PLVNSLSISLVIYKGFPSDVFELRSLLSARAMTAGVSRSEWEYTPLYDVTRPFLEEIPAT 98
P S S ++ ++ F + RS R T+ S LY+++ + IP T
Sbjct: 291 PSGGSQSTNVTTFRRFSQSSYPRRSNYRRRISTSSKS--------LYELSPSKFKSIPIT 342
Query: 99 LETPPPPVLVWIAWASWRSIFTWAECKTESSPSGESIVAISTSDTNGDSFATRTNDGSRK 158
PPP + + S F C+T +S + ++ + T+ ++RT +
Sbjct: 343 -SNPPPMLNLSKGSTSVEPTF----CETNASVALSTVTSTPVFSTDSSPLSSRTRENLLS 397
Query: 159 RIAQSISVASSGKT 172
I ++S + T
Sbjct: 398 LIPSAVSSPTKANT 411
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 58 VFELRSLLSARAMTAGVSRSEWEYTPLYDV 87
V++LRSL S+ ++ V+ +W P+Y +
Sbjct: 364 VWDLRSLKSSSSVATPVASFKWHRAPIYSI 393
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 199 QGFPINDWVRNVESFYDPS 217
Q +P++D V N + YDPS
Sbjct: 102 QKYPLSDQVENSSNIYDPS 120
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/56 (14%), Positives = 27/56 (48%)
Query: 195 ISPFQGFPINDWVRNVESFYDPSFAGHGESITAVNENGHIYGEINGVPFDNSAKSD 250
++P + + + ++ ++D G G + +N++ +++ ++ + NS D
Sbjct: 326 LNPLYSWDVTESNHSINIWFDFFTLGDGANYAEINDSSYVFPKVPSIMIANSTNVD 381
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,391
Number of Sequences: 5004
Number of extensions: 53685
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 9
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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