GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002725-TA|BGIBMGA002725-PA|undefined
         (251 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 91  FLEEIPATLETPPPPVLVWIAWASWRSIFTWAECKTESSPSGESIVAISTSDTNGDSFAT 150
           F+    A L+   PP+L     +  RS+FT  +C   +S S    +  ST     DSF  
Sbjct: 64  FIGSPRARLDRVVPPLLA----SRQRSLFTPKQCALGASRSPSLTIVHSTRPCTVDSFFC 119

Query: 151 RTNDGSRKRIAQSISVASSGKTGTGRXXXXXXXXXGHPYLFPFYISPFQGFP 202
            +     KRI   IS+ S+   G                  P Y++ + GFP
Sbjct: 120 TSRLLEMKRIL-LISLFSAVVNGF-YYKRTLYGDANEGAAMPDYVNAYYGFP 169


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 55  PSDVFELRSLLSARAMTAGVSRSEWEYTPLYDVTRPFLEEIPATLETPPPPVLVWIAWAS 114
           PS +      +  RA      +   + TPL   +   + E+PA  E  P PV V      
Sbjct: 104 PSPIQGASVAMPVRARIQESPKVSRDPTPLSRASSVVIPEVPAVSEPEPLPVEVLAISIP 163

Query: 115 WRSIFT--WAECKTESSPSGESIVAISTSDTNGDSFATRTNDGSRKRIAQSI 164
             S  T        E+  S   +VAIS+++ + D+ A       +K++A S+
Sbjct: 164 TTSPDTAPSTSSSVETVESVTEVVAISSAEASSDAPA---RSPLKKKVANSV 212


>Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 99  LETPPPPVLVWIAWASWRSIFTWAECKTESSPSGESIVAISTSDTNGDSFATRTNDGSRK 158
           L + PP V    AW   R        +TES  S      I T D + D+    T   +R+
Sbjct: 87  LHSNPPRVSASPAWKRDRD-------ETESWDSFGRESGIMTGDNDSDNDGLATPTPARR 139

Query: 159 RIAQSISVASSGKTG 173
           R+ +  S  S GK G
Sbjct: 140 RLREEASSPSPGKRG 154


>Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 99  LETPPPPVLVWIAWASWRSIFTWAECKTESSPSGESIVAISTSDTNGDSFATRTNDGSRK 158
           L + PP V    AW   R        +TES  S      I T D + D+    T   +R+
Sbjct: 87  LHSNPPRVSASPAWKRDRD-------ETESWDSFGRESGIMTGDNDSDNDGLATPTPARR 139

Query: 159 RIAQSISVASSGKTG 173
           R+ +  S  S GK G
Sbjct: 140 RLREEASSPSPGKRG 154


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,253
Number of Sequences: 27539
Number of extensions: 290324
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 12,573,161
effective HSP length: 80
effective length of query: 171
effective length of database: 10,370,041
effective search space: 1773277011
effective search space used: 1773277011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)