GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002725-TA|BGIBMGA002725-PA|undefined
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 193 FYISPFQGFPINDWV 207
           F +   QGFP N WV
Sbjct: 298 FLVPMLQGFPSNSWV 312


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 193 FYISPFQGFPINDWV 207
           F +   QGFP N WV
Sbjct: 266 FLVPMLQGFPSNSWV 280


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 197 PFQGFPINDWVRNVES 212
           P+QG+  N+ V NVE+
Sbjct: 307 PWQGYMTNNGVNNVEA 322


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 197 PFQGFPINDWVRNVES 212
           P+QG+  N+ V NVE+
Sbjct: 307 PWQGYMTNNGVNNVEA 322


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 197 PFQGFPINDWVRNVES 212
           P+QG+  N+ V NVE+
Sbjct: 307 PWQGYMTNNGVNNVEA 322


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 55  PSDVFELRSLLSARAMTAGVSR---SEWEYTPLYDVTRPFLE 93
           P DV  L   LSA AM  G+S    +E++    +  TR  LE
Sbjct: 180 PVDVLVLTVTLSASAMVLGLSSYSLTEFQQRRAFLETRQSLE 221


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
          protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 17 PGADLDLEIDVTDTD 31
          PGA L +++DV +T+
Sbjct: 54 PGASLPIDVDVYNTE 68


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 221 HGESITAVNENGHIYGEINGVPFDNSAKSD 250
           +G  + A+N NG   GE++    D+    D
Sbjct: 372 NGAGVGAMNANGEAVGEVDEDDDDDGDDDD 401


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,605
Number of Sequences: 429
Number of extensions: 3519
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)