GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002723-TA|BGIBMGA002723-PA|IPR004156|Organic anion
transporter polypeptide OATP, IPR011497|Protease inhibitor, Kazal-type
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.6  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   3.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   3.7  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 279 AVLLIIRCTDKHDKAMAMGVIQFAIGVFGNVPCPI---VFGAAVDAACRLRDY 328
           AVLL+IR  D HDK+  +  +   IG+   +   +   +FG   D +    D+
Sbjct: 199 AVLLMIRSDDPHDKSQTIDYLIIVIGILYTLEMLLKIYLFGFLYDGSSSFYDF 251


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 18  FP-RQIKPEPIQLQMKKTKEKREPFVKDFFAAIKRQITNDILMWRTASSVL 67
           FP ++ +P P QL      EK+ PF K   ++I + +T   L    AS +L
Sbjct: 487 FPIQENQPLPEQLMFLSNLEKQTPFAKAVGSSIYKLVTGKNLSLDFASQIL 537


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 324 RLRDYAC-----GELGACVFYDTHSFRYFYLGLSAAIMFLAFIMD 363
           ++R Y C     G+   C+  D H F+Y +L   A++   +++ D
Sbjct: 329 KIRTYTCCGVKEGDSSGCIIEDNHVFKYRHLPYLASVHPFSYLPD 373


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,001
Number of Sequences: 5004
Number of extensions: 62220
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 3
length of query: 411
length of database: 2,362,478
effective HSP length: 74
effective length of query: 337
effective length of database: 1,992,182
effective search space: 671365334
effective search space used: 671365334
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)