Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002723-TA|BGIBMGA002723-PA|IPR004156|Organic anion
transporter polypeptide OATP, IPR011497|Protease inhibitor, Kazal-type
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0353 + 16915618-16916934 32 0.73
11_08_0038 + 27873511-27873599,27873731-27873779,27873875-278739... 30 3.9
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 29 5.1
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 29 6.8
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 9.0
>09_04_0353 + 16915618-16916934
Length = 438
Score = 32.3 bits (70), Expect = 0.73
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 145 LMFVSCPEKSYRYLSAASDSALPCSMACHCENASFSPVCGQDSYTYLSPCQAGCMGSMQL 204
L+ V P + + S ++LPCS A C NA +SP+C Q++ Y + + L
Sbjct: 117 LLCVEQPTPYFEPAKSTSYASLPCSSAM-C-NALYSPLCFQNACVYQAFYGDSASSAGVL 174
Query: 205 DNNTFLY 211
N TF +
Sbjct: 175 ANETFTF 181
>11_08_0038 +
27873511-27873599,27873731-27873779,27873875-27873922,
27873956-27874022,27874471-27874556,27875039-27875167,
27875557-27875648,27875797-27875890
Length = 217
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 184 GQDSYTYLSPCQAGCMGSMQLDNNTFLYYNCSCINGSATTDLGKLYDLHNRTFQELAAPE 243
GQ T + M + LD Y N + AT DL K H + L PE
Sbjct: 95 GQGGATMSRENEDAFMDMLLLDPIENRYKNEE-VRAQATRDLSKCIVDHRMAAKSLPTPE 153
Query: 244 GYAVSGEC 251
YAV EC
Sbjct: 154 QYAVEREC 161
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 204 LDNNTFLYYNCSCINGSATTDLGKL-YDLHNRTFQELAAPEG 244
+D+N + +C+ I+GS +D G + +D R Q L PEG
Sbjct: 229 VDDNADITISCAPIDGSRASDYGLVKFDDSGRVIQFLEKPEG 270
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 29.1 bits (62), Expect = 6.8
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 302 AIGVFGNVPCPIVFGAAVDAACRLRDYACGELGACVFYDTHSFRYFYLGLSAAIMFLAFI 361
+ F N ++ A A ++ A + V HS +++ + AAI+ ++ I
Sbjct: 262 SFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLI 321
Query: 362 M-DLLVWSKAGRIDMNP 377
+ +LVW K GR + P
Sbjct: 322 VAPILVWRKRGRAAIGP 338
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.7 bits (61), Expect = 9.0
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 199 MGSMQLDNNTFLYYNCSCINGSA--TTDLGKLYDLHNRTFQELAAPEGYAVSGEC----G 252
+ ++Q NN L SCIN T+ G+L +N TF AP Y + G+C
Sbjct: 2138 LAALQFGNNNPLV---SCINFKRVWTSPNGELPG-YNLTFWRPQAPSNYVILGDCVSSRC 2193
Query: 253 VPCSQIYVFIA 263
VP SQ+ V ++
Sbjct: 2194 VPPSQVVVAVS 2204
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.139 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,103
Number of Sequences: 37544
Number of extensions: 404335
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,793,348
effective HSP length: 84
effective length of query: 327
effective length of database: 11,639,652
effective search space: 3806166204
effective search space used: 3806166204
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -