Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002722-TA|BGIBMGA002722-PA|IPR004156|Organic anion
transporter polypeptide OATP
         (317 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   2.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.1  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 223 VMPHLLYGTELLNVHIDGQIAGAAPLCNVYNN 254
           VMPHL +  E++    +  +   A +   YNN
Sbjct: 163 VMPHLYFNDEVMQKAYNIAMGDTADMKKTYNN 194


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 98  GVEATPEEQERLATGNNNGSLVAKLP 123
           GV+  P E E L+T  ++G L    P
Sbjct: 299 GVKIEPAEAESLSTSGSSGILTPVSP 324


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,541
Number of Sequences: 429
Number of extensions: 3094
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 317
length of database: 140,377
effective HSP length: 58
effective length of query: 259
effective length of database: 115,495
effective search space: 29913205
effective search space used: 29913205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)