GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002722-TA|BGIBMGA002722-PA|IPR004156|Organic anion
transporter polypeptide OATP
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    33   0.053
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    31   0.22 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    31   0.22 
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.50 
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    28   2.0  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   4.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    26   8.1  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 119 VAKLPPRSQQAHPRSAFYSTR---VFMLVFLSGWVLQGMFLTYFVSVTTTLEKLYKVESK 175
           ++ L      AHP++  ++ R   VFM   +  +V+       F S+  ++   + V ++
Sbjct: 60  ISNLISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIWTS--NGFGSIEYSVMAQFNVSAQ 117

Query: 176 TTGTLLAATEIGQICTALFLTYLAGRGHRPRWIACMMMVLAVGVIGCVMPHLLYGTELLN 235
                L+   +G     +FL  L+  G R     C + V  V  I C +P  +   +++ 
Sbjct: 118 VATLCLSMNILGSGLGPMFLGPLSDIGGRKPVYFCSIFVYTVFNISCALPRNI--VQMII 175

Query: 236 VHIDGQIAGAAPLCNV 251
            H    +AG+  L NV
Sbjct: 176 SHFIIGVAGSTALTNV 191


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 240 GQIAGAAPLCNVYNNFTLCNSDQIKVTETRSSITAVVIP 278
           G ++G   + +  NN T   S  +  TET SS T VVIP
Sbjct: 147 GTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 240 GQIAGAAPLCNVYNNFTLCNSDQIKVTETRSSITAVVIP 278
           G ++G   + +  NN T   S  +  TET SS T VVIP
Sbjct: 147 GTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 279 WLFICLLVVGVGQTGIATLGIPYVDDNVGSRQSPLYMG 316
           WL +C  + G+G  GI +L    + D    R  P+Y G
Sbjct: 186 WLIVCRAIQGLGGGGIISLVNIIISDITPLRTRPMYSG 223


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 279 WLFICLLVVGVGQTGIATLGIPYVDDNVGSRQSPLYMG 316
           WL +C  V G+G  GI +L    + D    +  P Y G
Sbjct: 180 WLVLCRAVQGIGGGGITSLVTIVIADITPLQTRPYYTG 217


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 279 WLFICLLVVGVGQTGIATLGIPYVDDNVGSRQSPLYMG 316
           WL +C  V G+G  GI +L    + D    +  P Y G
Sbjct: 180 WLVLCRAVQGIGGGGIMSLVTIVIADITPLQTRPYYTG 217


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 131 PRSAFYSTRVFMLVFLSGWVLQGMFLTYFVSVTTTLEKLYKVESKTTGTLLAATEIGQ 188
           P   + S  +F  +F  GW++  +  T   ++  T   LY  ES+ T   L    IG+
Sbjct: 573 PLPMYGSKYIFSKLFFRGWIIVIIIWTLIAALYITFYPLY--ESRDTIVYLCKLAIGK 628


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/72 (25%), Positives = 26/72 (36%)

Query: 127 QQAHPRSAFYSTRVFMLVFLSGWVLQGMFLTYFVSVTTTLEKLYKVESKTTGTLLAATEI 186
           Q  + +  F    V  +V  SG+    +   Y  SV      LY   S   G  L+   I
Sbjct: 269 QDTNSKLGFVGCLVIFVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQAGNFLSLAGI 328

Query: 187 GQICTALFLTYL 198
             +   L  +YL
Sbjct: 329 INVPLLLIFSYL 340


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 132 RSAF-YSTRVFMLVFLSGWVLQGMFLTYFVSV 162
           + AF ++T VF++VFL+GW  + + +    S+
Sbjct: 44  KEAFVFNTVVFIIVFLTGWAAKSIIVKLLPSL 75


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 140 VFMLVFLSGW------VLQGMFLTYFVSVT-TTLEKLYKVESKTTGTLLAATEIGQICTA 192
           VF+  FLS W      +L G  L     V    L+ L+KV  +    L +A + G    +
Sbjct: 362 VFLSTFLSKWAEDRDMMLYGFILGILALVVHLVLDVLHKVRVQPYFVLYSAMQFGFSIGS 421

Query: 193 LFLTYLAGRGHRPRWIACMMMVLAVGVIGCVMPHLLYGTELLNVHIDGQIA 243
             L  LA +   P++   + +++ +G+        + G  + ++   G IA
Sbjct: 422 APLISLATKQLHPKYHILVGIIVQIGISAADTVGAICGGAIFDITTVGFIA 472


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 31  NCKLQSVSDASGARTQPPHPLAYPGSDIIRLPQLMVT 67
           NC L+ + D   AR Q P    Y  +   R P++M+T
Sbjct: 152 NCDLK-ICDFGLARIQDPQMTGYVSTRYYRAPEIMLT 187


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,828
Number of Sequences: 5004
Number of extensions: 44944
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 11
length of query: 317
length of database: 2,362,478
effective HSP length: 73
effective length of query: 244
effective length of database: 1,997,186
effective search space: 487313384
effective search space used: 487313384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)