GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002721-TA|BGIBMGA002721-PA|IPR002624|Deoxynucleoside
kinase
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    99   4e-21
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    30   2.0  
02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165...    28   6.2  
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    28   8.2  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   8.2  

>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 19/181 (10%)

Query: 7   KPFTVFVEGNIGSGKTTFLEHFR----QFEDIT-LLTEPVEMWRDL--KGCNLLELMYKD 59
           K  T  VEGNI  GKTTFL+       +  D+  ++ EP+  W+D+     N+L+  Y +
Sbjct: 44  KRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAE 103

Query: 60  PEKWAMTFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHMMRNNTLHPAQFAVL 119
           P++            M +        P++LMERS+FS R  FV  +   N ++  + ++ 
Sbjct: 104 PQR-----------VMQEKESSSGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIY 152

Query: 120 DEWFRFIQHNIP-IDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDWL 178
           D WF  +  ++P +  D  +YL+ SP   ++R+  R RSEE  V L Y+  LH  HE WL
Sbjct: 153 DSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWL 212

Query: 179 I 179
           +
Sbjct: 213 L 213


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 60  PEKWAMTFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHMMRNNTLHPAQF-AV 118
           P  +A    S  + T L  H   AP+    +  S FS  Y F  H M N   +P  F A 
Sbjct: 87  PRGFADWSASTSAFTSLAAHSSTAPS--NAVHYS-FSPCYAFWTHYMLNKNAYPTSFPAP 143

Query: 119 LDEWFRFIQHNIPIDA 134
            D+  R   +N P DA
Sbjct: 144 HDDHLRLANNNHPRDA 159


>02_05_1163 +
           34615591-34615678,34615866-34616202,34616419-34616582,
           34616706-34616871,34617255-34617357,34617453-34617578,
           34617718-34617807,34618030-34618308
          Length = 450

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 40  PVEMWRDLKGCNLLELMYKDPEKWAMTFQSYVSLTML--DMHRRP 82
           P  +W+   G  L    Y D E+W   F S  SL  L  D  R P
Sbjct: 113 PWTLWKGSLGLELFNQNYSDSEEWRQMFFSDPSLRFLYADWERLP 157


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/27 (33%), Positives = 20/27 (74%)

Query: 155 ARSEEQCVPLSYIEELHRLHEDWLINR 181
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 462 SQSEVKCLMLQLLEGVKYLHDNWVLHR 488


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/27 (33%), Positives = 20/27 (74%)

Query: 155 ARSEEQCVPLSYIEELHRLHEDWLINR 181
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 446 SQSEVKCLMLQLLEGVKYLHDNWVLHR 472


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,002,439
Number of Sequences: 37544
Number of extensions: 272643
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 5
length of query: 248
length of database: 14,793,348
effective HSP length: 80
effective length of query: 168
effective length of database: 11,789,828
effective search space: 1980691104
effective search space used: 1980691104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)