GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002721-TA|BGIBMGA002721-PA|IPR002624|Deoxynucleoside
kinase
         (248 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    30   1.3  
U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81038-15|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z81038-14|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    27   9.5  
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    27   9.5  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    27   9.5  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    27   9.5  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    27   9.5  
U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    27   9.5  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      27   9.5  

>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 18  GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKWAMTFQSYVSL 73
           G  K + L H   FE  I        ++  L GC L + M+ +PEK+       V+L
Sbjct: 447 GKPKNSILPHHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKFCNPLGGDVNL 503


>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 70  YVSLTMLDMHRRPAPTPVKLMERSLFSARYCF----VEHMMRNNTLHPAQFAVLDEWFRF 125
           YV L  +       P   +  +R L   RYCF    + H +RN T  P  FA L   F  
Sbjct: 334 YVLLKAICFCNPAVPELSQNAQRILAKERYCFADILINHCLRNYTDGPGHFAELIGIFNL 393

Query: 126 IQHNIPIDADL-IVYL 140
           ++    +  DL I+Y+
Sbjct: 394 LETQQRMFKDLHIMYV 409


>Z81038-15|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 217 AVNVVMSSPNKHSPKKPISTTPIKITP 243
           A  V  SS +    KKP   TP+K+TP
Sbjct: 398 AKKVDSSSDSSDDEKKPTKATPVKVTP 424


>Z81038-14|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 217 AVNVVMSSPNKHSPKKPISTTPIKITP 243
           A  V  SS +    KKP   TP+K+TP
Sbjct: 673 AKKVDSSSDSSDDEKKPTKATPVKVTP 699


>Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical
           protein F17C11.11 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 143 SPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDW---LINRIH 183
           SP I+Y   KKR    E  + L  ++   +L++ W   LI R++
Sbjct: 61  SPFIMYSLNKKRRWEAEDAIGLELLDRAQKLNDGWKVLLIERVN 104


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 23/165 (13%)

Query: 12  FVEGNIGSGKTTFLEHFRQFEDITLLTE---PV-EMWRDLKGCNLLELMYKDPEKWAMTF 67
           F+EG    G  +  E+ RQFE +  +     PV   W+  KG + +   Y     W  TF
Sbjct: 406 FLEGRKSIGSVSSDEYRRQFESVERVYASPFPVNSTWQHCKGSSPMYRGY-TCGLWT-TF 463

Query: 68  QSYVSLTMLDMHRRPAPTPVKLME------RSLFSARYCFVEHMMRNNTLHPAQFAVLDE 121
            +    T +D  +     P+K +       +S F   +C    M    TL P     L+E
Sbjct: 464 HALTVHTYIDTIKDDYVNPMKPLSTIQGWVKSYFGCEHCRNHFMHMTTTLFP-----LNE 518

Query: 122 WFRFIQHNIPIDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSY 166
             R ++H      D++ YL  + +IV  R+   +  + Q   + +
Sbjct: 519 --RRVRH----PHDMMTYLWRAHNIVNNRLHGDSTEDPQFTKMQF 557


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 18  GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKWAMTFQSYVSL 73
           G  K + L +   FE  I        ++  L GC L + M+ +PEK+       V+L
Sbjct: 405 GKPKNSILPNHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKFCNPLGGDVNL 461


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
           protein ZK328.7b protein.
          Length = 1098

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 46  DLKGCNLLELMYKDPEKWAMTFQSYVSLTMLDMHRRPA 83
           DLK   LL  ++K+  KW +  Q   ++  +D H   A
Sbjct: 927 DLKANLLLSKIFKEENKWTLVLQPCQTVIQVDPHNDEA 964


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
           protein ZK328.7a protein.
          Length = 1332

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 46  DLKGCNLLELMYKDPEKWAMTFQSYVSLTMLDMHRRPA 83
           DLK   LL  ++K+  KW +  Q   ++  +D H   A
Sbjct: 927 DLKANLLLSKIFKEENKWTLVLQPCQTVIQVDPHNDEA 964


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   PFTVFVEGNIGSGKTTFLEHF 28
           P+T+FV GN G     F EHF
Sbjct: 341 PYTLFVSGNNGQVPFEFTEHF 361


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   PFTVFVEGNIGSGKTTFLEHF 28
           P+T+FV GN G     F EHF
Sbjct: 341 PYTLFVSGNNGQVPFEFTEHF 361


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   PFTVFVEGNIGSGKTTFLEHF 28
           P+T+FV GN G     F EHF
Sbjct: 376 PYTLFVSGNNGQVPFEFTEHF 396


>U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical
          protein K04G7.4b protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 11 VFVEGNIGSGKTT 23
          + VEGNIGSGKTT
Sbjct: 75 IVVEGNIGSGKTT 87


>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
          protein K04G7.4a protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 11 VFVEGNIGSGKTT 23
          + VEGNIGSGKTT
Sbjct: 75 IVVEGNIGSGKTT 87


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   PFTVFVEGNIGSGKTTFLEHF 28
           P+T+FV GN G     F EHF
Sbjct: 341 PYTLFVSGNNGQVPFEFTEHF 361


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8   PFTVFVEGNIGSGKTTFLEHF 28
           P+T+FV GN G     F EHF
Sbjct: 341 PYTLFVSGNNGQVPFEFTEHF 361


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,201,085
Number of Sequences: 27539
Number of extensions: 249378
Number of successful extensions: 627
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 20
length of query: 248
length of database: 12,573,161
effective HSP length: 80
effective length of query: 168
effective length of database: 10,370,041
effective search space: 1742166888
effective search space used: 1742166888
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)