Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002719-TA|BGIBMGA002719-PA|IPR008266|Tyrosine protein
kinase, active site, IPR000649|Initiation factor 2B related
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 204 1e-52
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 172 7e-43
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 44 6e-04
12_02_0420 - 18920511-18920717,18920968-18921209,18921786-189219... 43 7e-04
03_06_0682 - 35516081-35518303 34 0.34
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 31 3.2
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602... 29 9.8
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 204 bits (499), Expect = 1e-52
Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 2/303 (0%)
Query: 394 LHPAIVKLGVQLSSRVVKGSNARCIALLDALNKMVRDYVLPAKTEFSRGLESHLASSLEF 453
+HP++ K+G+Q S V G N RCIA+L A ++DY P K SR L + ++S + F
Sbjct: 287 MHPSVYKVGLQYLSGEVSGGNGRCIAMLLAFQVAIKDYSTPPKKTLSRDLTAKISSYVSF 346
Query: 454 LWTTREPCASQINAVKFFRHHLAQLPNNVDEFDAKKTLQEEIDRYIREQIEMAGEAISIA 513
L R S NA++F ++ +A+LP + E +AK +LQ +IDR+I E+I +A + I
Sbjct: 347 LIECRPLSISMGNAIRFLKNRIAKLPLTLSESEAKASLQSDIDRFINEKIVVADKVIVSH 406
Query: 514 VRNKISNGDTILTYGCSSLIEQILCEAWEAGLQFRTLVVGSRVSPDAAEMLRRLCARGLP 573
K+ + D +LTYG SS++E IL A E G +FR +VV SR + +LRRL +G+
Sbjct: 407 AITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVEKGIN 466
Query: 574 CTYVDFTAVNYVMKTVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVLVACHTHK 633
CTY A++Y+M V++ PVLV C +K
Sbjct: 467 CTYTHINAISYIMHEVTRVFLGASSILSNGTVYSRVGTASVAMVAHAFGIPVLVCCEAYK 526
Query: 634 FIDSLYTDAFMHNQIGDPDDLLE--KSDDNSPLKDWRSNLNLTPLNLTYDVTPPCLITAV 691
F + + D+ N++GDPD +L+ D LK+ N NL LNLTYD TP ++ +
Sbjct: 527 FHERVQLDSICANELGDPDVILKVPGKADLGHLKNLADNENLQLLNLTYDATPSDYVSMI 586
Query: 692 VTE 694
+T+
Sbjct: 587 ITD 589
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 172 bits (419), Expect = 7e-43
Identities = 99/315 (31%), Positives = 161/315 (51%), Gaps = 18/315 (5%)
Query: 394 LHPAIVKLGVQLSSRVVKGSNARCIALLDALNKMVRDYVLPAKTEFSRGLESHLASSLEF 453
+HP++ K+G+Q S V+ G NA C+A+L A + ++DY P+ +R L + ++S + F
Sbjct: 282 MHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLTAKISSYVSF 341
Query: 454 LWTTREPCASQINAVKFFRHHLAQLPNNVDEFDAKKTLQEEIDRYIREQIEMAGEAISIA 513
L + S NA++F ++ +A+L + E +AK +LQ +IDR+I E+I +A I
Sbjct: 342 LIECKPLSISMGNAIRFLKNRIAKLLLTLSESEAKASLQSDIDRFINEKIIIADHVIVSH 401
Query: 514 VRNKISNGDTILTYGCSSLIEQILCEAWEAGLQFRTLVVGSRVSPDAAEMLRRLCARGLP 573
K+ + D +LTY SS++E I A E G +FR +VV SR + + +L RL A+G+
Sbjct: 402 AIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGIS 461
Query: 574 CTYVDFTAVNYVMKTVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVLVACHTHK 633
CTY A++Y+M V++ PVLV C
Sbjct: 462 CTYTHINAISYIMHEVTRVFLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCC---- 517
Query: 634 FIDSLYTDAFMHNQIGDPDDLLEKSDDNSPLKDWRSNLNLTPLNLTYDVTPPCLITAVVT 693
D + +++ + +DL LK+ N NL LNL YD P ++ ++T
Sbjct: 518 -------DPDVISRVPEREDLCH-------LKNCTYNENLQLLNLKYDTMPSDYVSMIIT 563
Query: 694 ELAILPCTSAPVVLR 708
E +LP TS PV++R
Sbjct: 564 EYGMLPPTSVPVIVR 578
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 43.6 bits (98), Expect = 6e-04
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 7/199 (3%)
Query: 501 EQIEMAGEAISIAVRNKISNGDTILTYGCSSLIEQILCEAWEAGLQFRTLVVGSRVSPDA 560
++I+ + IS I + ILT G S +++ L A E FR V
Sbjct: 187 DEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKEKKRSFRVFVAEGAPRYKG 246
Query: 561 AEMLRRLCARGLPCTYVDFTAVNYVMKTVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 620
+ + L +G+ T + +AV ++ V+
Sbjct: 247 HVLAKELVEKGVQTTVITDSAVFAMISRVNMVIVGAHAIMANGGVIAPVGMNMVALAAQR 306
Query: 621 XXXPVLVACHTHKFIDSL-YTDAFMHNQIGDPDDLLE----KSDDNSPLKDWRSNLNLTP 675
P +V +HK + + N++ P DLL+ S N +D LN+
Sbjct: 307 HAVPFVVVAGSHKLCPLYPHNPEVLLNELKSPSDLLDFGEFSSCMNFSTQDGTPLLNV-- 364
Query: 676 LNLTYDVTPPCLITAVVTE 694
+N T+D PP L++ +T+
Sbjct: 365 VNPTFDYVPPKLVSLFITD 383
>12_02_0420 -
18920511-18920717,18920968-18921209,18921786-18921927,
18922012-18922164,18922845-18923243
Length = 380
Score = 43.2 bits (97), Expect = 7e-04
Identities = 38/152 (25%), Positives = 57/152 (37%)
Query: 483 DEFDAKKTLQEEIDRYIREQIEMAGEAISIAVRNKISNGDTILTYGCSSLIEQILCEAWE 542
++FDA K+ E E A + I++ ++ IS+G TIL +G S ++ ++L A
Sbjct: 162 EKFDAAKSRLIERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAAS 221
Query: 543 AGLQFRTLVVGSRVSPDAAEMLRRLCARGLPCTYVDFTAVNYVMKTVSKXXXXXXXXXXX 602
FR L R M L A G+P + +AV Y M V
Sbjct: 222 NRKLFRVLCTEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVES 281
Query: 603 XXXXXXXXXXXXXXXXXXXXXPVLVACHTHKF 634
PV VA ++KF
Sbjct: 282 GGIINMMGTYQIALVAHSMNKPVYVAAESYKF 313
>03_06_0682 - 35516081-35518303
Length = 740
Score = 34.3 bits (75), Expect = 0.34
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 435 AKTEFSRGLESHLASSLEFLWTTREPCASQINAVKFFRHHLAQLPNN-VDEFDAKKTLQE 493
+K E + H S L TTR+ ++I A HHL L N + E +
Sbjct: 290 SKWEALKSYVQHGGSGSSVLTTTRDKTVAEIMAPPKEVHHLKDLNENFIKEIIERSAFNS 349
Query: 494 EIDRYIREQIEMAGEAISIAVRNKISNGDTILTYGCSSLIEQILCEAWEAGLQFRTL 550
E ++ E +EM G+ + K S T S+L + + WEA L+ T+
Sbjct: 350 EEEKRQSELLEMVGD-----IAKKCSGSPLAATALGSTLRTKTTKKEWEAILRRSTI 401
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 31.1 bits (67), Expect = 3.2
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 189 PKVESTDEVDKSVVINPNAVDISTSREQIKADRXXXXXXXXXXXXXXXDGESNVQSSVKK 248
P++E T ++D + ++ +A D ST +EQ R + E + Q ++
Sbjct: 515 PQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEAEIQKMVQEAELHSQKDQER 574
Query: 249 ELKEDDSVKQNEDMTVKDVVETL 271
+ D ++ N D T+ V ++L
Sbjct: 575 KALID--IRNNADTTIYSVEKSL 595
>11_01_0728 +
6023361-6023495,6024880-6025212,6025306-6025361,
6025526-6025684,6025790-6025889,6026481-6026623,
6026728-6026833,6027139-6027277,6027363-6027631,
6027734-6027820
Length = 508
Score = 29.5 bits (63), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 677 NLTYDVTPPCLITAVVTELAILPCTSAPVVLRFK 710
N +DVTP LITA++TE ++ + A K
Sbjct: 462 NPAFDVTPANLITAIITEKGVITKSDADETFNIK 495
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,387
Number of Sequences: 37544
Number of extensions: 531318
Number of successful extensions: 1303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 9
length of query: 716
length of database: 14,793,348
effective HSP length: 87
effective length of query: 629
effective length of database: 11,527,020
effective search space: 7250495580
effective search space used: 7250495580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -