Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002719-TA|BGIBMGA002719-PA|IPR008266|Tyrosine protein
kinase, active site, IPR000649|Initiation factor 2B related
(716 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.075
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 33 0.70
Z70751-4|CAI91168.1| 497|Caenorhabditis elegans Hypothetical pr... 32 1.2
Z70751-3|CAA94752.1| 529|Caenorhabditis elegans Hypothetical pr... 32 1.2
Z70750-18|CAI91163.1| 497|Caenorhabditis elegans Hypothetical p... 32 1.2
Z70750-17|CAA94749.1| 529|Caenorhabditis elegans Hypothetical p... 32 1.2
Z81461-8|CAB03839.1| 442|Caenorhabditis elegans Hypothetical pr... 31 2.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 31 2.8
U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical pr... 30 6.5
>Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1098.4 protein.
Length = 305
Score = 36.3 bits (80), Expect = 0.075
Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 12/216 (5%)
Query: 483 DEFDAKKTLQEEIDRYIREQIEMAGEAISIAVRNKISNGDTILTYGCSSLIEQILCEAWE 542
++F L + R + + + IS R ++ ILT+ S ++ + + +A +
Sbjct: 88 EDFSQVLDLYRQRARSFIKNVRGSRAKISKCARLFFTHHMNILTHSYSKVVLETILDAHK 147
Query: 543 AGLQFRTLVVGSRVSPDAAEMLRRLCARGLPCTYVDFTAVNYVMKTVSKXXXXXXXXXXX 602
+G V S+ + L G+P T V + V YVM+ +
Sbjct: 148 SGYHLHVWVTESQPDASGKLVFEELKKNGVPTTLVLDSCVGYVMERIQAVLVGAEGVMET 207
Query: 603 XXXXXXXXXXXXXXXXXXXXXPVLVACHTHKFIDSLYTDAFMHNQIGDPDDLLEKSDDNS 662
PV V T KF+ F NQ P + ++ S
Sbjct: 208 GGIINKIGTVNVCIIAKSRHVPVYVCAETIKFVRE-----FPLNQADIPQEFKYRT---S 259
Query: 663 PLKDWRSNLNLTPLNLTYDVTPPCLITAVVTELAIL 698
++ R+NL L ++ Y T P +T ++T++ +
Sbjct: 260 VIE--RNNLELEHPDVDY--TAPEFLTLIITDVGAM 291
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 33.1 bits (72), Expect = 0.70
Identities = 16/77 (20%), Positives = 42/77 (54%)
Query: 435 AKTEFSRGLESHLASSLEFLWTTREPCASQINAVKFFRHHLAQLPNNVDEFDAKKTLQEE 494
A+ E ++ L ++ ++++ + T I +A++ +N+++ + K L +E
Sbjct: 311 AEAETNKYLTTNKVATVDSMGTISNELLQDIWPKTNKWRRVARVEDNIEDSEGSKKLDKE 370
Query: 495 IDRYIREQIEMAGEAIS 511
++R +R I+ AG+++S
Sbjct: 371 VEREVRAAIKSAGQSLS 387
>Z70751-4|CAI91168.1| 497|Caenorhabditis elegans Hypothetical
protein F11A3.2b protein.
Length = 497
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 687 LITAVVTELAILPCTSAPVVLRFK 710
L+TAVVT+L IL TSAP VL+ K
Sbjct: 468 LVTAVVTDLRILGPTSAPAVLKAK 491
>Z70751-3|CAA94752.1| 529|Caenorhabditis elegans Hypothetical
protein F11A3.2a protein.
Length = 529
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 687 LITAVVTELAILPCTSAPVVLRFK 710
L+TAVVT+L IL TSAP VL+ K
Sbjct: 500 LVTAVVTDLRILGPTSAPAVLKAK 523
>Z70750-18|CAI91163.1| 497|Caenorhabditis elegans Hypothetical
protein F11A3.2b protein.
Length = 497
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 687 LITAVVTELAILPCTSAPVVLRFK 710
L+TAVVT+L IL TSAP VL+ K
Sbjct: 468 LVTAVVTDLRILGPTSAPAVLKAK 491
>Z70750-17|CAA94749.1| 529|Caenorhabditis elegans Hypothetical
protein F11A3.2a protein.
Length = 529
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 687 LITAVVTELAILPCTSAPVVLRFK 710
L+TAVVT+L IL TSAP VL+ K
Sbjct: 500 LVTAVVTDLRILGPTSAPAVLKAK 523
>Z81461-8|CAB03839.1| 442|Caenorhabditis elegans Hypothetical
protein C04F12.10 protein.
Length = 442
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 10 CLQKRWCVVNWEIFLKNFLLSF----YHRNSQKKPQTVLKSLVDAENY 53
CL K NW +FL + ++F H+N+ K+P V K L+ E+Y
Sbjct: 5 CLFKALLATNWALFLWDQYITFRQYKAHKNAVKRPNEV-KELIGEEDY 51
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.1 bits (67), Expect = 2.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 239 ESNVQSSVKKELKEDDSVKQNEDMTVKDVVETLKNIVSVAKEVNEITTKVSALDLGGKKQ 298
E + + KK KE D +Q D + ++VVE KN S K + K + + G ++
Sbjct: 316 EKSSKKRSKKSKKESDEEQQASD-SEEEVVEVKKNSKSPKKTPKKTAVKEESEESSGDEE 374
Query: 299 EETGK 303
EE K
Sbjct: 375 EEVVK 379
>U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical
protein R03H4.6 protein.
Length = 646
Score = 29.9 bits (64), Expect = 6.5
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 465 INAVKFFRHHLAQLPNNVDEFDAKKTLQEEIDRYIREQIEM 505
+N + FF H++ Q P+ ++ + +E RY++++ M
Sbjct: 544 LNFLNFFMHYVVQRPDELESLHLNRQKADEQMRYVKKRFSM 584
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,693
Number of Sequences: 27539
Number of extensions: 505184
Number of successful extensions: 1645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 13
length of query: 716
length of database: 12,573,161
effective HSP length: 87
effective length of query: 629
effective length of database: 10,177,268
effective search space: 6401501572
effective search space used: 6401501572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -