GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002719-TA|BGIBMGA002719-PA|IPR008266|Tyrosine protein
kinase, active site, IPR000649|Initiation factor 2B related
         (716 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.93 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 458 REPCASQINAVKFFRHHLAQLPNNVDEFDAKKTLQEEIDRYIREQ 502
           REP   +IN  K  RHH  +       F+ + T     DRY  E+
Sbjct: 140 REPGTPRINFTKLKRHH-PRYKRPRTTFEPRATDSRHYDRYKEEE 183


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 485 FDAKKTLQEEIDRYIREQIEMAGEAISIAVRNKIS 519
           FD  K L E+++R+I E  E+  + +  A     S
Sbjct: 196 FDGNKELGEQMNRFINENSELLFKELQAAYEETFS 230


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 20  WEIFLKNFLLSFYHRNSQKKPQTVL 44
           W  F    LL+ Y +NS+ KP+ VL
Sbjct: 298 WAPFHAQRLLAVYAQNSKDKPEDVL 322


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 374 QHLYTEFDKNPLKKI-PINSNLHPAIVKLGVQLSSRV 409
           + LY +   N  + I P+++N    +VKLG++LS  +
Sbjct: 22  KRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLI 58


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,566
Number of Sequences: 429
Number of extensions: 5820
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 716
length of database: 140,377
effective HSP length: 63
effective length of query: 653
effective length of database: 113,350
effective search space: 74017550
effective search space used: 74017550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)