GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002718-TA|BGIBMGA002718-PA|IPR000705|Galactokinase,
IPR006203|GHMP kinase, ATP-binding region, IPR006204|GHMP kinase,
IPR013750|GHMP kinase, C-terminal
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...   138   1e-33
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    33   0.068
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    29   1.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   1.9  
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...    28   2.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   2.5  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    28   3.4  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    27   4.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   4.5  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   4.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   5.9  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    27   5.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   7.8  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   7.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   7.8  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   7.8  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score =  138 bits (335), Expect = 1e-33
 Identities = 127/500 (25%), Positives = 215/500 (43%), Gaps = 41/500 (8%)

Query: 19  RINQLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAVGLINEK 78
           R  +L   FE+++  KP+F  + PGRVNIIGEHIDY  + VLPMA++  ++++V   ++ 
Sbjct: 22  RYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIVSVTTSDDA 81

Query: 79  DLRIRNTNSKYCKFQMDISKPEDFDIKPDEDGKPFWYNYVLCGV----KGGLEFLNRKIR 134
            + + NTN ++ +  +++  P D  +         W NY  C +    K  LE     + 
Sbjct: 82  KVELNNTNPEFKEEILEL--PSDGAVIEINKTHHTWGNYFRCSMIVAHKYILEKYPELVS 139

Query: 135 G------GVIFLIDGNIPPXXXXXXXXXXXXXXXXXXXHAQNAK-ISKLKIASLCAKSER 187
           G      G+  + DGN+P                     A     I+K  +  +   SE 
Sbjct: 140 GGKKPLKGLKLIFDGNVPTGGGLSSSAAFCVASILAILKANGINTITKEDLVKISVVSEH 199

Query: 188 YIGTQGGGMDQAIAFLAEKSSAQYITWNP-LNATPVSL----PENATFVVAHSLAEANK- 241
           Y+G   GGMDQ  +   E++ A  + + P L ATP  +    P +  F+++++L EANK 
Sbjct: 200 YVGVNTGGMDQCASIYGEQNKALLVQFKPKLMATPFKMPVLKPHDMVFLISNTLVEANKQ 259

Query: 242 -AATNDFNTRVIECRLAAKILAARSGIEVTKEIIXXXXXXXXXXXXXNEMLELVTEHLAK 300
             A  ++N RV+E  +A++ LA +  +E+ KE                 M E   +HL +
Sbjct: 260 ETALTNYNLRVVEMAVASEFLAKKFNLELPKE------SNLHTGTLRGFMDEYYEKHLKQ 313

Query: 301 DLYLKSDICELLNIPEDELNRFYLTPNTRHLTEFKLKQRAIHV---YEEAKRVDSFRYLC 357
             +  SDI   +   ++ L    +  +      FK ++ A  +    EE  +V   +   
Sbjct: 314 PHWDGSDIDMGVQRMQEMLRLTEIMFSEEQKVGFKTEELAKELGLSVEEFTKVFLTKIPV 373

Query: 358 QHSTFKNELSTNSNNGDLLYENGVEKI----------SNLIENLGVLMLESHESLKTHYE 407
           ++   K    T     D +    V K+             +   G L+ +S  S   +  
Sbjct: 374 KYERMKIYQRTVHVYSDAMRVLQVLKLFHQHKDSDDPQKFMLAFGRLLNDSQRSEDIYNN 433

Query: 408 CSHDNLDRLVDLSRKMNVY-ARLTGAGWGGCIVALCPKENVTKYIETLIDNFYVEHC-NL 465
            S   L  +  +S     Y AR TGAGWGG  V L   + + K +E L + +Y +    +
Sbjct: 434 SSSPELREVCKISLANGGYGARTTGAGWGGSAVHLTTHDKLAKLVEALTEQYYKKQFPKI 493

Query: 466 DRVSARSHVFATTPNRGAVI 485
            +    + V  + P  G+ I
Sbjct: 494 TQSELNAAVVVSKPAAGSCI 513


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 409 SHDNLDRLVDLSRKMNVYARLTGAGWGGCIVALCPKE 445
           SH ++DR++  ++ +  + +LTGAG GGC + L   E
Sbjct: 306 SHYSIDRVLQATKSIG-WTKLTGAGGGGCTITLLTPE 341


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 344 YEEAKRVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKI 384
           Y + KR    RYL +H   +  +  +S NG LL  + V  I
Sbjct: 89  YSKQKRASLRRYLEKHGKLEGSMKESSINGSLLRRSSVSTI 129


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 436  GCIVALCPKENVTKYIETLIDNFYVEHCNLDRVSARSHVFAT 477
            G ++ +CP E  ++  + +ID FY  + N   +S++  V+A+
Sbjct: 1338 GYLLRVCPLEIASQTCQEIIDKFYDGNTNEQIISSKLTVYAS 1379


>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 94  MDISKPEDFDIKPDEDGKPFWYNYVLCGV-KGGLEFLNRKIRGGVIFLID 142
           +D +   +F   P +  +  WY+ +LCGV +G LE L   +    +FL D
Sbjct: 109 LDDNPLAEFVELPADARQKLWYSNILCGVIRGALEMLQMDV--DAVFLRD 156


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 364 NELSTNSNNGDLLYENGVEKISNLIENLGVLMLESHESL-KTHYECS 409
           N+L T+  N    +E+ +EK+++ I N   L+L+  + L K+   CS
Sbjct: 115 NDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCS 161


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 61  PMALEQSILIAVGLINEKDLRIRN-TNSKYCKFQMDISKPEDFDIKPDED 109
           P+      L    L +E D R  + ++S YC+ +   S  +DF+I PD D
Sbjct: 139 PIPFSSDTLKKTYLSSENDARYPSVSDSPYCESEGFSSFEDDFEIDPDTD 188


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 84  NTNSKYCKFQMDISKPEDFDIKPDEDGKPFW 114
           NT    C+   D+  P+ FD     D  P+W
Sbjct: 173 NTRKLVCQVYKDLGLPQPFDSDEYNDDYPYW 203


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 409 SHDNLDRLVDLSRKMNVYARLTGAGWG 435
           ++ N++ +VD++ +MNV+A    AGWG
Sbjct: 137 NYANVELIVDIAERMNVHA--VWAGWG 161


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 337 KQRAIH-VYEEAKRVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLIENLGVLM 395
           K++ I+ V++  K     +   + +TF   L T  ++     + G     N I N+G   
Sbjct: 69  KEKVINPVFDPRKPAHELKGNKRDNTFVTSLFTGDDSEHFSQDVGQNLEDNQISNIGTTK 128

Query: 396 LESHESLKTHYECSHDNLDRLVD-LSRKMNVYARLTGAGWGGCIVALCPKENVTKYIE 452
             S+  +KT          +L D L+ KMN+ A    A    C+ AL   ++   +IE
Sbjct: 129 EASNAPIKTTNFAGVQLDTQLADHLNNKMNISA--PTAIQSCCLPALLNTDDKDAFIE 184


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 205 EKSSAQYITWNPLNATPVSLPENATFVVAHSLAEANKAATNDFNTRVIECR 255
           E  + + + +NP   TPV +P  AT  V     E N    N+   ++I  R
Sbjct: 505 ESQNTENVDYNPQTHTPVPIPTTATQDVVTIRPEFNSQLLNNLR-QIINAR 554


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 307 DICELLNIPEDELNRFYLTPNTRHLTE 333
           +IC L N+P+ E+ R Y T   R LTE
Sbjct: 183 EICTLTNVPKKEIGRVYKTLQ-RMLTE 208


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 364  NELSTNSNNGDLLYENGVEKISNLIENLGVLMLESHESLKTHYECSHDNLDRLV 417
            N +  + +  D L+   + + S L E + + M+ +H S+   YE   + ++RL+
Sbjct: 1355 NAILPHGSTSDKLFLLEIPEKSYLTEKVSISMIFAHPSVSGIYETRIEPIERLI 1408


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 369 NSNNGDLLYENGVEKISNLIENLGVLMLESHESLKTHYECSHDNLDRLVDLSRKMN 424
           N++ G  LY NG +   N IE+   L+    ESL    +   + L    DLS K+N
Sbjct: 224 NNDEGMYLYSNGDDLNENTIEDFFGLVRARLESLNL-LDSDSELLCEFPDLSLKIN 278


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 214 WNPLNATPVSLPENATFVVAHSLAEANKAATNDFNTRVIE 253
           W  + +T +S P      +A+ L   N  A  D  TRVI+
Sbjct: 183 WGCIWSTILSFPSQRPGALAYLLRVCNNLAEEDIQTRVIQ 222


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 95  DISKPEDFDIKPDEDGKPFWYNYVLCGVKG 124
           DI    DF    + +  P WY YVLC  +G
Sbjct: 183 DIPFASDFFCSRETNMPPTWYLYVLCTSEG 212


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,686
Number of Sequences: 5004
Number of extensions: 91576
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 19
length of query: 489
length of database: 2,362,478
effective HSP length: 76
effective length of query: 413
effective length of database: 1,982,174
effective search space: 818637862
effective search space used: 818637862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)