Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002718-TA|BGIBMGA002718-PA|IPR000705|Galactokinase,
IPR006203|GHMP kinase, ATP-binding region, IPR006204|GHMP kinase,
IPR013750|GHMP kinase, C-terminal
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 248 1e-65
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 31 2.7
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 30 4.8
04_04_1091 - 30798420-30798584,30798870-30799045,30799127-307992... 29 6.3
11_01_0729 + 6032566-6032769,6033942-6034091,6034343-6034531,603... 29 8.4
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 248 bits (606), Expect = 1e-65
Identities = 170/497 (34%), Positives = 247/497 (49%), Gaps = 57/497 (11%)
Query: 16 ADTRINQLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAVGLI 75
A R+ +L +KF + +P + PGRVN+IGEHIDY GY VLPMA+ Q +++A+
Sbjct: 39 ARLRLARLADKFHAVYAARPALFARSPGRVNLIGEHIDYEGYSVLPMAIRQDMIVAIRRA 98
Query: 76 NEKDLRIRNTNSKY--CKFQMDISKPEDFDIKPDEDGKPFWYNYVLCGVKGGLEFLNRK- 132
K++R+ N + KY C + D K + DIK + W +Y +CG KG E+ K
Sbjct: 99 EGKEVRVANVDDKYPICVYPADPDK--EIDIKNHK-----WGHYFMCGYKGVYEYCRSKG 151
Query: 133 -IRGGVIFL---IDGNIPPXXXXXXXXXXXXXXXXXXXHAQNAKISKLKIASLCAKSERY 188
GG + L +DG +P K ++A +SER+
Sbjct: 152 IDMGGPVGLDVVVDGTVPTGSGLSSSAAFVCSATIAIMGVLEKNFPKKEVAQFTCQSERH 211
Query: 189 IGTQGGGMDQAIAFLAEKSSAQYITWNPLNATPVSLPENATFVVAHSLAEANKA--ATND 246
IGTQ GGMDQAI+ +A+ A+ I +NP++AT V LP TFV+AH LAE+ KA A +
Sbjct: 212 IGTQSGGMDQAISIMAKPGFAELIDFNPIHATDVQLPPGGTFVIAHCLAESKKAETAATN 271
Query: 247 FNTRVIECRLAAKILAARSGIEVTKEI--------IXXXXXXXXXXXXXNEMLELVTEHL 298
+N RV+ECRLAA +LA + G+E K + + ++ V + L
Sbjct: 272 YNNRVVECRLAAIVLAIKLGMETKKAVSSVTTLSDVEGLCVSFAGKEGSSDPGVAVKKLL 331
Query: 299 AKDLYLKSDICELLNIPEDELNRFYLTPNT-----RHLTEFKLKQRAIHVYEEAKRVDSF 353
++ Y E+ I L + + T R FKL QRA HVY EA+RV +F
Sbjct: 332 HEESYTTE---EIEKITGQSLTSIFQSSQTSLDVLRAAKHFKLFQRAFHVYSEARRVYAF 388
Query: 354 RYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLIENLGVLMLESHESLKTHYECSHDNL 413
R T ++LS ++++ LG LM ESH S YECS L
Sbjct: 389 R-----DTVLSKLSA----------------EDMLQKLGDLMNESHYSCSVLYECSCPEL 427
Query: 414 DRLVDLSRKMNVY-ARLTGAGWGGCIVALCPKENVTKYIETLIDNFYVEHCNLDRVSARS 472
+ LV + R ARLTGAGWGGC VAL + V ++I L + +Y + ++ +
Sbjct: 428 EELVKVCRDNGALGARLTGAGWGGCAVALVKEGIVPQFILNLKETYYKSRIDRGVINQKD 487
Query: 473 ---HVFATTPNRGAVIY 486
+VFA+ P+ GA I+
Sbjct: 488 LGLYVFASKPSSGAAIF 504
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 30.7 bits (66), Expect = 2.7
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 338 QRAIHVYEEAKRVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLIENLGVLMLE 397
Q +H+ + + D R++C + FK L+ +G+ V+K N + G+LM
Sbjct: 728 QTILHIAVQTESHDVVRFVCSNEMFKMVLNMKDYDGNTALHLAVQKGHN--KTFGILMGC 785
Query: 398 SHESLKTHYECSHDNLDRLV 417
+ SL + LD V
Sbjct: 786 KNVSLSIRNRNGYTPLDHAV 805
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 29.9 bits (64), Expect = 4.8
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 329 RHLTEFKLKQRAIHVYEEAKRVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLI 388
RHLTE L +A ++ + + Q + ++E+S ++ + YE + +++++
Sbjct: 434 RHLTEGSLPDKAASNFKNGIKPSASSKQKQQNDSQSEISDHTTGASIFYEKAKKHLADML 493
Query: 389 EN 390
+N
Sbjct: 494 KN 495
>04_04_1091 -
30798420-30798584,30798870-30799045,30799127-30799216,
30799673-30799742,30800598-30800697,30800922-30801001,
30801347-30801412,30801489-30801597,30801862-30801905,
30802171-30802242,30803198-30803311,30804342-30804398
Length = 380
Score = 29.5 bits (63), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 388 IENLGVLMLESHESLKTHYECSHDNLDRLVDLSRKMN--VYARLTGAGWGGCIVAL 441
+ G L+ S S +YEC + +L ++ K + AR +GAG+ GC +A+
Sbjct: 247 LREFGQLISASGRSSILNYECGSKEMIQLYEILLKAPGVLGARFSGAGFRGCCLAV 302
>11_01_0729 +
6032566-6032769,6033942-6034091,6034343-6034531,
6034660-6034776,6034871-6035031,6035131-6035371
Length = 353
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 415 RLVDLSRKMNVYARLTGAGWGGCIVALCP 443
++V+ +R + A+ TG+G G +VALCP
Sbjct: 288 KMVEAARSVGAAAKFTGSG--GAVVALCP 314
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,821
Number of Sequences: 37544
Number of extensions: 514449
Number of successful extensions: 1113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 8
length of query: 489
length of database: 14,793,348
effective HSP length: 85
effective length of query: 404
effective length of database: 11,602,108
effective search space: 4687251632
effective search space used: 4687251632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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