GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002718-TA|BGIBMGA002718-PA|IPR000705|Galactokinase,
IPR006203|GHMP kinase, ATP-binding region, IPR006204|GHMP kinase,
IPR013750|GHMP kinase, C-terminal
         (489 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.82 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 332 TEFKLKQRAIHVYEEAKRVDSFRYLCQHSTF 362
           TE+K++   +   EE +R +  RY   H  F
Sbjct: 583 TEWKVRPSTVEEREEFRRQERMRYAAPHKAF 613


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 20/110 (18%), Positives = 45/110 (40%)

Query: 349 RVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLIENLGVLMLESHESLKTHYEC 408
           RVD+  Y+C+   F +E  +   N     E  ++  ++ I     ++ +  + L    + 
Sbjct: 221 RVDALPYICEDMRFLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLDEFPQP 280

Query: 409 SHDNLDRLVDLSRKMNVYARLTGAGWGGCIVALCPKENVTKYIETLIDNF 458
            H  ++   +LS  M  Y       +    +    +++ +   + LIDN+
Sbjct: 281 KHMLIEAYTNLSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLIDNW 330


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 19/110 (17%), Positives = 45/110 (40%)

Query: 349 RVDSFRYLCQHSTFKNELSTNSNNGDLLYENGVEKISNLIENLGVLMLESHESLKTHYEC 408
           RVD+  Y+C+   F +E  +   N     E  ++  ++ I     ++ +  + L    + 
Sbjct: 221 RVDALPYICEDMRFLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLDEFPQP 280

Query: 409 SHDNLDRLVDLSRKMNVYARLTGAGWGGCIVALCPKENVTKYIETLIDNF 458
            H  ++   +LS  M  Y       +    +    +++ +   + L+DN+
Sbjct: 281 KHMLIEAYTNLSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLVDNW 330


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,959
Number of Sequences: 429
Number of extensions: 5312
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 489
length of database: 140,377
effective HSP length: 60
effective length of query: 429
effective length of database: 114,637
effective search space: 49179273
effective search space used: 49179273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)