GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002716-TA|BGIBMGA002716-PA|IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal, IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    30   0.90 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   3.6  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 445 ARYLVKAWQQAAGASQLTPTVAYIRRVTSGRRAPPFDSSLAGLIDAFHTVAAGKIGLCVA 504
           A + +KA  +   A Q++     I   +  +    +DSS   ++        G +  C  
Sbjct: 457 AVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRG-VWACSF 515

Query: 505 NIEKRQKEGLSYEDA---WNMTSVQLTQASEAHCRAILLLTYHEQTEMQCKNASPELREV 561
           N   RQ    S +     WN+ + Q  Q  E H  AIL L Y  Q       A+  L +V
Sbjct: 516 NPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKV 575

Query: 562 LS 563
            S
Sbjct: 576 WS 577


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 393 VSTADAAQCVERCRLACGGHGYMLSSNLPTSYGLVTAACTYEGENTVLLLQTARYLVKAW 452
           +S  DA  C++  RLA      +L SN  T  G   +  +    N + L+   + L+++ 
Sbjct: 747 LSGNDAQACLQNYRLAAHLLESLLESNFSTPDGANDSNNSVTIRNLIALITKRQELLQSK 806

Query: 453 Q-QAAGASQLTPTVAYI 468
           Q QA  A+++T +VA I
Sbjct: 807 QIQANVANKVTESVAKI 823


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,668
Number of Sequences: 5004
Number of extensions: 121604
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 2
length of query: 669
length of database: 2,362,478
effective HSP length: 77
effective length of query: 592
effective length of database: 1,977,170
effective search space: 1170484640
effective search space used: 1170484640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)