GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002716-TA|BGIBMGA002716-PA|IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal, IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase
         (669 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              26   3.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   6.4  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   6.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 445 ARYLVKAWQQAAGASQLTPTVAYIRRVTSGRRAP 478
           AR +++  QQAA A  +T   A+  R   GR+ P
Sbjct: 184 ARSVIELQQQAAAAPMMTAQGAHSSRNRRGRQGP 217


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/49 (22%), Positives = 26/49 (53%)

Query: 50  IHIDQVPSEYLSHKEKYELAIKKASLMFKLLRKWQEEENTGMENYRAVL 98
           IH+D V  E  S +++ +  I K + + +  +K + E+N  ++    ++
Sbjct: 401 IHLDSVNREQKSDQDRLDSEINKKAQIEENYKKIESEKNEALKRQEKLI 449


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 598 WYEDLLSQLRPNAVGLVDAFDIRDEILHSALGAYDGRVYERLMEEALKSPLNAE 651
           W+  ++ +LR   +   +   +  ++   +L A + R  +  +E+A+K    AE
Sbjct: 312 WWAPVIEELRNECIAARERMRLTTDLQERSLAAAEHRTAKTRLEKAIKVGKRAE 365


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,393
Number of Sequences: 2123
Number of extensions: 28116
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 4
length of query: 669
length of database: 516,269
effective HSP length: 69
effective length of query: 600
effective length of database: 369,782
effective search space: 221869200
effective search space used: 221869200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)