GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002716-TA|BGIBMGA002716-PA|IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal, IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase
         (669 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           25   2.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           25   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   6.1  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 578 VGDLLRFTSISERDIERLQRWYEDLLSQLRPNAVGLVDAFDIRDEILH--SALGAYDGRV 635
           +G  LRF  IS  D  R+ +     L++ +   V    A   +DE+    + + A+  + 
Sbjct: 1   MGTFLRFLGISSSDDNRIDQ--ATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKY 58

Query: 636 --YERLMEEALKSPLNAEPVNRSFHQY 660
             Y+R     + +PLN  P N+ F  +
Sbjct: 59  PEYQRYFTAFMDTPLNELPANKRFQAH 85


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 578 VGDLLRFTSISERDIERLQRWYEDLLSQLRPNAVGLVDAFDIRDEILH--SALGAYDGRV 635
           +G  LRF  IS  D  R+ +     L++ +   V    A   +DE+    + + A+  + 
Sbjct: 1   MGTFLRFLGISSSDDNRIDQ--ATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKY 58

Query: 636 --YERLMEEALKSPLNAEPVNRSFHQY 660
             Y+R     + +PLN  P N+ F  +
Sbjct: 59  PEYQRYFTAFMDTPLNELPANKRFQAH 85


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 457 GASQLTPTVAYIRRVTSGRRAPPFDSSLAGLIDAFHTVAAGKIGLCVANIEKRQKE 512
           G SQ +P     RR  S   +P  D    G ++A  +   G++   +   EKR  E
Sbjct: 356 GQSQSSPKFV-ARREESNSSSPSLDLGKEGGLEAQWSRVLGRVHATIERNEKRLAE 410


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,962
Number of Sequences: 429
Number of extensions: 7916
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 669
length of database: 140,377
effective HSP length: 62
effective length of query: 607
effective length of database: 113,779
effective search space: 69063853
effective search space used: 69063853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)