Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002715-TA|BGIBMGA002715-PA|undefined
         (469 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.59 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.78 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   3.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKTYGNSFGSAASNAKN 203
           S  ST  AGNA ++A     +     + N     N  G+ ASN  N
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNN 268



 Score = 25.4 bits (53), Expect = 1.0
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 144 HSAAHSDGISDSSLSTASTNGAGNAQSSAQTQGISGF--GTTSTNAKTYGNSFGSAASNA 201
           H   H D   +    T +T GA   ++  +    S    G  +TNA    N+  +  +N 
Sbjct: 192 HKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNN-NNNNNNN 250

Query: 202 KNGYGSAVTSAKTNGFGAATSNAQTNG 228
            NG       A  NG G   SN   NG
Sbjct: 251 NNG-------ANDNGNGNGASNNNNNG 270


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 144  HSAAHSDGISDSSLSTASTNGAGNAQSSAQTQGISGFGTTSTNAKTYGNSFGSAASNAKN 203
            +S   S  ++ ++ S+     A  A +  Q + +    TT+ +  T    +     + KN
Sbjct: 922  YSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTIDCSTQSEYYELEVKDQKN 981

Query: 204  GYGSAVTSAKTNGFGAATSNAQTNGV 229
            G   +V S  T    +A ++  TN V
Sbjct: 982  GKPPSVVSRSTQ--TSANNDKDTNAV 1005


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 178 SGFGTTSTNAKTYGNSFGSAASNAKNGYGSAVTSAKTNGFGAA 220
           SG+  T +N+++  +S  S + N+     S     + + FG++
Sbjct: 15  SGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSS 57


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 144 HSAAHSDGISDSSLSTASTNGAGNAQSSAQTQGISGF-GTTSTNAKTYGNSFGSAASNAK 202
           H+       + ++++T ST G+G+  +S    G+S    +TS+      N    A  N  
Sbjct: 217 HAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPN 276

Query: 203 NGYGSAVTS 211
           +    ++ S
Sbjct: 277 SSLQPSLAS 285


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 178 SGFGTTSTNAKTYGNSFGSAASNAKNGYGSAVTSAKTNGFGAA 220
           SG+  T +N+++  +S  S + N+     S     + + FG++
Sbjct: 15  SGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSS 57


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 384 TANPSYPGYGSAISSANTGGYGTAKSSANTQGS 416
           + +PSYPG GS+  S ++     +  S  + GS
Sbjct: 78  STSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGS 110


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 219 AATSNAQTNGVTGIIAPVAP 238
           A   +  T+G +GI+ PV+P
Sbjct: 305 AEAESLSTSGSSGILTPVSP 324


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.122    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,142
Number of Sequences: 429
Number of extensions: 4550
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 469
length of database: 140,377
effective HSP length: 60
effective length of query: 409
effective length of database: 114,637
effective search space: 46886533
effective search space used: 46886533
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 45 (22.2 bits)