GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002715-TA|BGIBMGA002715-PA|undefined
         (469 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.093
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    27   0.28 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   1.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   1.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   1.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   1.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   1.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   1.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   1.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   2.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.7 bits (61), Expect = 0.093
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 217 FGAATSNAQTNGVTGIIAPVAPI-NDLESTVISAKTQGIYTGYTNPNIGSASSNANVNGH 275
           +G   SN++ N +   +     + + L  T I     G+Y    +  +GSA  +A +N +
Sbjct: 450 YGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGGLYRCVASSKVGSADHSARINVY 509

Query: 276 G 276
           G
Sbjct: 510 G 510


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 153 SDSSLSTASTNGAGNAQSSAQTQGISGFGTTSTNAKTYGNSFGSAASNAKNGYGSAVTSA 212
           SDS+    S+N       +     +S     S N    G SFGS+  N+    G A+   
Sbjct: 8   SDSTTMATSSNAMSPMTPTYSMNSMSCVSMPSMNCSPQGASFGSSMLNSGMPGGMAM--- 64

Query: 213 KTNGFGAATSNAQTNGVTGIIAPVA 237
             NG G  +S+    G T I +P++
Sbjct: 65  --NGNGMTSSSM---GYTTIGSPIS 84


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 116 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 147


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKT 189
           STAS N +  A S++ T      GT + N+K+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 158 STASTNGAGNAQSSAQTQGISGFGTTSTNAKTYGNS 193
           ST S N +  A S++ T      GT + N+K+  +S
Sbjct: 160 STTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSS 195


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.122    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,764
Number of Sequences: 317
Number of extensions: 3609
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 469
length of database: 114,650
effective HSP length: 59
effective length of query: 410
effective length of database: 95,947
effective search space: 39338270
effective search space used: 39338270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 45 (22.2 bits)