Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002714-TA|BGIBMGA002714-PA|IPR001050|Syndecan,
IPR003585|Neurexin/syndecan/glycophorin C, IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase
(275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 37 0.004
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 28 1.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 1.7
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 2.2
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 27 2.9
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 27 2.9
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo... 27 3.9
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.1
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 26 6.8
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi... 26 6.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 8.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.9
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 8.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 8.9
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 36.7 bits (81), Expect = 0.004
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 6/160 (3%)
Query: 35 GSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYTTSTDAAPTDDHERKLI 94
GSG +DE +D DSS + E +D D ++S+ + ++
Sbjct: 104 GSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD 163
Query: 95 SDFYDETEVEIEKESEQTDXXXXXXXXXXXXXXXXXXXXXXVFVPVNKPSGGEVEPHGAG 154
S + E E SE D + S E G+
Sbjct: 164 SS-SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS-----SSDSESESSSEGSD 217
Query: 155 EERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPDSRPS 194
S ++ + + ++ + D E ++ D DS S
Sbjct: 218 SSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 257
Score = 29.5 bits (63), Expect = 0.55
Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 4/175 (2%)
Query: 20 DGVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYTT 79
D +S S+ +++ S +D DSS + E +D D ++
Sbjct: 143 DSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSS 202
Query: 80 STDAAPTDDHERKLISDFYDETEVEIEKESEQTDXXXXXXXXXXXXXXXXXXXXXXVFVP 139
S+ + ++ S + E E SE D
Sbjct: 203 SSSDSESESSSEGSDSS-SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDS 261
Query: 140 VNKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPDSRPS 194
++ S + + + S D + + + SE +++ + D + ++ D DS S
Sbjct: 262 ESESSSKDSD--SSSNSSDSEDDSSSDSSDSESESS-SEDSDSTSSSSDSDSSSS 313
Score = 29.5 bits (63), Expect = 0.55
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 1/113 (0%)
Query: 2 DDAAVAESPSINLSLPLNDGVASDQSTFVDADEGSGL-ETDEXXXXXXXXXXXXDDEDSS 60
D + + S + S +D + S D+ S E++ D E S
Sbjct: 188 DSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESES 247
Query: 61 GEAPTDHDELPPDDEDYTTSTDAAPTDDHERKLISDFYDETEVEIEKESEQTD 113
+D D E ++S D+ + + D ++ E E SE +D
Sbjct: 248 SSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSD 300
Score = 28.7 bits (61), Expect = 0.96
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 21 GVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYTTS 80
G +SD+S ++ S E ++ EDS + + E E +S
Sbjct: 106 GSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSS 165
Query: 81 TDAAPTDDHERKLISD-FYDETEVEIEKESEQTDXXXXXXXXXXXXXXXXXXXXXXVFVP 139
+ ++ ++ +D ++ E E SE +D
Sbjct: 166 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 225
Query: 140 VNKPSGGEVEPHGAGEERPSRPDQNGEINISEED-TNPAIDQEQAGTNVDPDS 191
++ S + + S D E + + D ++ + D E ++ D DS
Sbjct: 226 ESESSSED------NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDS 272
Score = 28.3 bits (60), Expect = 1.3
Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 7/194 (3%)
Query: 7 AESPSINLSLPLNDGVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTD 66
++S S D +S S+ +++ S + DSS + +
Sbjct: 112 SDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 171
Query: 67 HDELPPDDEDYTTSTDAAPTDDHERKLISDFYDETEVEIEKESEQTDXXXXXXXXXXXXX 126
E +D D ++S+ + ++ S ++ E E SE +D
Sbjct: 172 ESESSSEDNDSSSSSSDSESESSSEDSDSS-SSSSDSESESSSEGSDSSSSSSSSESESS 230
Query: 127 XXXXXXXXXVFVPVNKPSGGEVEPHGA---GEERPSRPDQNGEINIS---EEDTNPAIDQ 180
++ S + + + E S D + N S ++ ++ + D
Sbjct: 231 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS 290
Query: 181 EQAGTNVDPDSRPS 194
E ++ D DS S
Sbjct: 291 ESESSSEDSDSTSS 304
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 19 NDGVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYT 78
N ++D S + D D+ +T++ DDE SSG + DE ++E+
Sbjct: 198 NYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYERDEDVDEEEEED 257
Query: 79 TSTDAAPTDDHE 90
+ DD +
Sbjct: 258 DDENNDEGDDED 269
Score = 26.2 bits (55), Expect = 5.1
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 19 NDGVASD--QSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDD-- 74
NDG D + + D + SG E+ E DDE++ + D DE D+
Sbjct: 220 NDGTDDDINNNEYKDDESSSGSESYERDEDVDEEEEEDDDENN--DEGDDEDENENDELR 277
Query: 75 -EDYTTSTDAAPTDDHERKLIS--DFYDETEV 103
E+ + + AA ++ E +S + YDET +
Sbjct: 278 SENGSPNPSAAVINEQENMNMSGIEEYDETNL 309
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 32 ADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYTTSTDAAPTDDHER 91
++E S E + E+S E P +D + + S + ++ E
Sbjct: 38 SEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSE-SDSESSEEEEETES 96
Query: 92 KLISDFYDETEVEIEKESEQTD 113
+ S+ DE+E E E ESE +
Sbjct: 97 EEDSEVSDESESESESESESEE 118
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 164 NGEINISEEDTNPAIDQEQAGTNVDPDSRPSEV 196
+G+I + EE + P I+ E+ G VD D E+
Sbjct: 963 SGDITMGEEPSEPVINFEKFGVEVDYDELDEEL 995
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 208 ISFFAQPGILAAVIGGAVVG 227
+SF QP ++A +IGG V+G
Sbjct: 51 LSFLQQPRVIAEIIGGIVLG 70
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 55 DDEDSSGEAPTDHDEL-PPDD-------EDYTTSTDAAPTDDHERKLISDFYDETEVEIE 106
+DE++S TD +L PP+D E+ T STD + E K S VEIE
Sbjct: 41 NDENTSNNNATDLGDLAPPEDDIDWGDMENDTISTDVNKPAEPESKETS--APAAAVEIE 98
Query: 107 KESE 110
KE+E
Sbjct: 99 KENE 102
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 56 DEDSSGEAPTDHDELPPDDEDYTTS 80
DE+ S +A TD ++L DDE+ +S
Sbjct: 351 DEEDSEDAYTDEEDLSSDDEEILSS 375
>SPCC24B10.13 |skb5||Shk1 kinase binding protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 68 DELPPDDEDYTTSTDAAPTDDHERKLISDFYDETEVEIEKESEQTD 113
D L P D + A ++ E + + D +DET +E +SE D
Sbjct: 15 DYLYPPDHELHYGFHARVIEEEEERFVDDTFDET-IEGSDDSESID 59
>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 223 GAVVGLLCAILVVMFIVYRMRKK 245
G VGL C IL+V+F+ + R++
Sbjct: 146 GLSVGLSCCILIVLFLHFATRRE 168
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 55 DDEDSSGEAPTDHDELPPDDEDYTTSTDA 83
D E + G P +H E DDE+ + DA
Sbjct: 60 DPEMTHGTKPKEHGEFDTDDEEEEENPDA 88
>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 12 INLSLPLNDGVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELP 71
I L+ + + + ++ +A++ + L+ +E DD D E DHD
Sbjct: 51 IGLNRSMQEQLDLEEQEREEANQDTELDEEELGSGSFPEEGEMDDMDGDNEEVEDHDIEE 110
Query: 72 PDDEDYTTSTDAA 84
D + T+ DA+
Sbjct: 111 VDLDADITNADAS 123
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 55 DDEDSSGEAPTDHDELPPDDEDYTTSTDAAPTDDHERKLISDFYDETEVEIEKESEQTD 113
D+ D S E ++++ D D ++D + D Y E+EVE E+ E D
Sbjct: 938 DEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEE---DGYSESEVEDEESGEDWD 993
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 19 NDGVASDQSTFVDADEGSGLETDEXXXXXXXXXXXXDDEDSSGEAPTDHDELPPDDEDYT 78
N+ A+D+ +++D S +++ D E + +DHD+ D
Sbjct: 167 NNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDSKLD 226
Query: 79 TSTDAAPTDDHERKLISDFYDETEVEIEKESEQTD 113
+ + + +RK DE + E S+ D
Sbjct: 227 NLRNYIVSLNQKRK-----KDEADAESVLSSDDND 256
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 57 EDSSGEAPTDHDELPPD-DEDYTTSTDAAPTDDHERKL--ISDFYDETEVEIEKESE 110
ED S + +H +P T ++DA+ D+++ + +FYD + ++ E
Sbjct: 29 EDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEFYDSMKSAEREQME 85
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 88 DHERKLISDFYDETEVEIEKESEQTD 113
D +RKL++DF + + E E ++T+
Sbjct: 1616 DLQRKLLNDFVSQLNINEELEDDETE 1641
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.130 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,428
Number of Sequences: 5004
Number of extensions: 52188
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 26
length of query: 275
length of database: 2,362,478
effective HSP length: 72
effective length of query: 203
effective length of database: 2,002,190
effective search space: 406444570
effective search space used: 406444570
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)
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