GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002714-TA|BGIBMGA002714-PA|IPR001050|Syndecan,
IPR003585|Neurexin/syndecan/glycophorin C, IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.73 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 219 AVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDE 254
           A++ G + GL+  +L+   I    +  DE  + L+E
Sbjct: 412 AIVSGLITGLIMRVLICGSISEEQKFDDEAHWELEE 447


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 98  YDETEVEIEKESEQTD 113
           YD  ++E+EK+SEQ D
Sbjct: 154 YDGYQLELEKQSEQGD 169


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 199 MNAKPEDRAISFFAQPGILAAVIGGAVV 226
           MN +   RA+ ++ Q GILA V G  +V
Sbjct: 509 MNYETMGRALRYYYQRGILAKVDGQRLV 536


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 216 ILAAVIGGAVVGLLCAILVVMFIVYRMRK 244
           ++A V+G  +VG +   ++V   V+ +RK
Sbjct: 43  LIALVLGSIIVGTVIGNILVCVAVFLVRK 71


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 56  DEDSSGEAPTDHDELPPDD 74
           D  +  E P D D  PPDD
Sbjct: 652 DTTNFDEYPPDSDPPPPDD 670


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 164 NGEINISEEDTNPAID 179
           NG  N S  D++PAI+
Sbjct: 544 NGNTNSSARDSSPAIE 559


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.130    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,548
Number of Sequences: 429
Number of extensions: 3093
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)