Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002712-TA|BGIBMGA002712-PA|IPR003439|ABC transporter
related, IPR003593|AAA ATPase
(312 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette... 133 7e-33
U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette... 133 7e-33
U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette... 133 7e-33
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 33 0.008
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 25 2.1
>U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 133 bits (321), Expect = 7e-33
Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 24/256 (9%)
Query: 43 RKVAKPKTVIIDNAC--IREGEFAAIIGPSGAGKTTFLVSLAGKCTLPFEGTVTINGRNV 100
RK P+ ++ N + GE A++G SGAGKTT L +LA + V I+ V
Sbjct: 106 RKDFNPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSP----PGVKISPNAV 161
Query: 101 RDLTGAEI-----------VPQFDVFTDSLTVMEQLVFMTEMKLGNSTKQPNKSI-LNTV 148
R L G + V Q D+F SLT E L+F +++G K + V
Sbjct: 162 RALNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEV 221
Query: 149 IEEFKLSAHVETXXXX------XXXXXXXXXXXATSFLSNPQILICDEPTTGLDSYNASQ 202
++E L +T A+ L++P +L+CDEPT+GLDS+ A
Sbjct: 222 LQELSLVKCADTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHS 281
Query: 203 VIGILKKLSASGKIVICSVHQPSCDIFKEFNSILLMAEGNLLFHGTQDACKSFFESIDLH 262
V+ +LK ++ GK +I ++HQPS +++ F+ ILL+AEG + F G+ FF + +
Sbjct: 282 VLQVLKGMAMKGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGIP 341
Query: 263 CPLNYNPAEFYIRAVS 278
CP NYNPA+FY++ ++
Sbjct: 342 CPPNYNPADFYVQMLA 357
>U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 133 bits (321), Expect = 7e-33
Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 24/256 (9%)
Query: 43 RKVAKPKTVIIDNAC--IREGEFAAIIGPSGAGKTTFLVSLAGKCTLPFEGTVTINGRNV 100
RK P+ ++ N + GE A++G SGAGKTT L +LA + V I+ V
Sbjct: 106 RKDFNPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSP----PGVKISPNAV 161
Query: 101 RDLTGAEI-----------VPQFDVFTDSLTVMEQLVFMTEMKLGNSTKQPNKSI-LNTV 148
R L G + V Q D+F SLT E L+F +++G K + V
Sbjct: 162 RALNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEV 221
Query: 149 IEEFKLSAHVETXXXX------XXXXXXXXXXXATSFLSNPQILICDEPTTGLDSYNASQ 202
++E L +T A+ L++P +L+CDEPT+GLDS+ A
Sbjct: 222 LQELSLVKCADTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHS 281
Query: 203 VIGILKKLSASGKIVICSVHQPSCDIFKEFNSILLMAEGNLLFHGTQDACKSFFESIDLH 262
V+ +LK ++ GK +I ++HQPS +++ F+ ILL+AEG + F G+ FF + +
Sbjct: 282 VLQVLKGMAMKGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGIP 341
Query: 263 CPLNYNPAEFYIRAVS 278
CP NYNPA+FY++ ++
Sbjct: 342 CPPNYNPADFYVQMLA 357
>U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 673
Score = 133 bits (321), Expect = 7e-33
Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 24/256 (9%)
Query: 43 RKVAKPKTVIIDNAC--IREGEFAAIIGPSGAGKTTFLVSLAGKCTLPFEGTVTINGRNV 100
RK P+ ++ N + GE A++G SGAGKTT L +LA + V I+ V
Sbjct: 84 RKDFNPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSP----PGVKISPNAV 139
Query: 101 RDLTGAEI-----------VPQFDVFTDSLTVMEQLVFMTEMKLGNSTKQPNKSI-LNTV 148
R L G + V Q D+F SLT E L+F +++G K + V
Sbjct: 140 RALNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEV 199
Query: 149 IEEFKLSAHVETXXXX------XXXXXXXXXXXATSFLSNPQILICDEPTTGLDSYNASQ 202
++E L +T A+ L++P +L+CDEPT+GLDS+ A
Sbjct: 200 LQELSLVKCADTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHS 259
Query: 203 VIGILKKLSASGKIVICSVHQPSCDIFKEFNSILLMAEGNLLFHGTQDACKSFFESIDLH 262
V+ +LK ++ GK +I ++HQPS +++ F+ ILL+AEG + F G+ FF + +
Sbjct: 260 VLQVLKGMAMKGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGIP 319
Query: 263 CPLNYNPAEFYIRAVS 278
CP NYNPA+FY++ ++
Sbjct: 320 CPPNYNPADFYVQMLA 335
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 33.5 bits (73), Expect = 0.008
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 63 FAAIIGPSGAGKTTFLVSLAGKCTLPFEGTVTINGRNVRDLTGAEIVPQFDVFTDSLTVM 122
F+A+IGP+G+GK+ F+ +++ + E T ++ R + +L + + ++ +VM
Sbjct: 33 FSAVIGPNGSGKSNFMDAIS---FVMGEKTSSLRVRKLTELINGASIGR--PISNRASVM 87
Query: 123 EQLVFMTEMKLGNSTKQPNKSILNTVIEEFKLSAHV 158
+ + TE + G K +S++N E++++ V
Sbjct: 88 ARFIIKTEAE-GEVEKTFQRSVIN-ASSEYRINGSV 121
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 25.4 bits (53), Expect = 2.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 63 FAAIIGPSGAGKTTFLVSL 81
F++IIGP+G+GK+ + S+
Sbjct: 96 FSSIIGPNGSGKSNVIDSM 114
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,686
Number of Sequences: 2123
Number of extensions: 11106
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 312
length of database: 516,269
effective HSP length: 64
effective length of query: 248
effective length of database: 380,397
effective search space: 94338456
effective search space used: 94338456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)
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