GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002710-TA|BGIBMGA002710-PA|undefined
         (58 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   1.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    23   6.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    23   6.4  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 6   EARDMARFLQGLEAELDPRRSGHNGYFPDIRKCLA 40
           E++ ++     + +ELD  R   +GY+ D RK +A
Sbjct: 175 ESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLIA 209


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 14  LQGLEAELDPRRSGHNGYF 32
           L G + E   + SGH GYF
Sbjct: 153 LDGYDPERGVKVSGHRGYF 171


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 2   HLMEEARDMARFLQGLEAELDPRRSG 27
           H  +E +D+AR +Q L  ELD   +G
Sbjct: 498 HYEQETKDLARQVQVLLHELDLCENG 523


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,035
Number of Sequences: 5004
Number of extensions: 5938
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 2,362,478
effective HSP length: 39
effective length of query: 19
effective length of database: 2,167,322
effective search space: 41179118
effective search space used: 41179118
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)