GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002710-TA|BGIBMGA002710-PA|undefined
         (58 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0084 + 18962892-18963383                                         27   1.5  
11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916...    27   2.5  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    26   3.4  
07_01_1164 - 11016314-11017688,11019144-11019181                       26   3.4  
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416...    26   4.4  

>11_05_0084 + 18962892-18963383
          Length = 163

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/46 (36%), Positives = 19/46 (41%)

Query: 1   MHLMEEARDMARFLQGLEAELDPRRSGHNGYFPDIRKCLALHAATG 46
           M  +  A D A  L GL   LD   +GH G  P        HAA G
Sbjct: 79  MAALRSAADGAARLVGLSRALDAVAAGHGGRSPGAGHGAPRHAAEG 124


>11_03_0042 -
           9167881-9168075,9168159-9168251,9168328-9168409,
           9168495-9168605,9171653-9171898,9172448-9173073,
           9173402-9173422
          Length = 457

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 6   EARDMARFLQGLEAELDPRRSGHNGYFPDIRKCLAL 41
           EA +  + +  LE  + P R G +GY    +KCL +
Sbjct: 184 EALERRKKMSDLEKNIYPHRLGSSGYAGHEKKCLVV 219


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 19  AELDPRRSGHNGYFPDI---RKCLALHAATGCRHKAALLA 55
           A    RR+ H  +FPD+   R CL  H A G R    LLA
Sbjct: 486 AAASSRRASHL-WFPDVTGKRACLRAHGAYGGRALEVLLA 524


>07_01_1164 - 11016314-11017688,11019144-11019181
          Length = 470

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 2   HLMEEAR---DMARFLQGLEAELDPRRSGHNGYFPDIRKC 38
           HL+E  R   ++ +  Q L  E+DP RS   G   +IR C
Sbjct: 180 HLLEGKRLCYELVQRSQTLRLEIDPVRSKERGVEAEIRLC 219


>11_01_0530 -
           4164590-4165264,4165378-4165467,4167482-4168011,
           4168094-4168603,4172207-4172432
          Length = 676

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 25  RSGHNGYFPDIRKCLALHAATGCRHKAALLAMN 57
           R+GH G    I + LAL +  GC+++A   A++
Sbjct: 138 RAGHAGAVTAIVQLLALDSILGCKNEAGDTALH 170


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,829
Number of Sequences: 37544
Number of extensions: 47117
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 14,793,348
effective HSP length: 38
effective length of query: 20
effective length of database: 13,366,676
effective search space: 267333520
effective search space used: 267333520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)