GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002709-TA|BGIBMGA002709-PA|IPR002067|Mitochondrial
carrier protein, IPR001993|Mitochondrial substrate carrier
         (287 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    56   3e-10
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    56   3e-10
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 21  HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 80
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 81  GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 138
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 139 IWVVKTRLCLQ 149
              V+ R+ +Q
Sbjct: 233 FDTVRRRMMMQ 243



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 64/290 (22%), Positives = 114/290 (39%), Gaps = 28/290 (9%)

Query: 20  EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 77
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 78  LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 134
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 135 MTNPIWVVKTRLCLQYSEEHVADNKRYKGMG-------FVPGMFGVSHG---ALQ-FMTY 183
              P+   +TRL     +      + + G+G          G+ G+  G   ++Q  + Y
Sbjct: 132 FVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIY 189

Query: 184 EEMK-NRYNQYRNLPIDIKLTS-VEYLTFAAISKLIAAGATYPYQVVRARLQDQ------ 235
                  Y+  R +  D K T  +     A +   +A   +YP+  VR R+  Q      
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKS 249

Query: 236 HRTYNGAWHCITETWRYERVRGFYKGLTPYLLHVTPNICLVMLIWEKFTN 285
              Y    HC    ++ E    F+KG    +L  T    LV++++++  N
Sbjct: 250 EILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGG-ALVLVLYDEIKN 298



 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 27/173 (15%)

Query: 115 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGM---------- 164
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM          
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 165 -GFVPGMFGVSHGALQFMTYEEM----KNRYNQYRNLPIDIKLTSVEYLTFAAISKLIAA 219
            GF+    G     +++   + +    K++Y Q     +D     + Y     ++   AA
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFV-GNLASGGAA 125

Query: 220 GAT-----YPYQVVRARLQDQ------HRTYNGAWHCITETWRYERVRGFYKG 261
           GAT     YP    R RL          R + G  +C+T+ ++ + + G Y+G
Sbjct: 126 GATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 21  HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 80
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 81  GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 138
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 139 IWVVKTRLCLQ 149
              V+ R+ +Q
Sbjct: 233 FDTVRRRMMMQ 243



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 64/290 (22%), Positives = 114/290 (39%), Gaps = 28/290 (9%)

Query: 20  EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 77
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 78  LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 134
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 135 MTNPIWVVKTRLCLQYSEEHVADNKRYKGMG-------FVPGMFGVSHG---ALQ-FMTY 183
              P+   +TRL     +      + + G+G          G+ G+  G   ++Q  + Y
Sbjct: 132 FVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIY 189

Query: 184 EEMK-NRYNQYRNLPIDIKLTS-VEYLTFAAISKLIAAGATYPYQVVRARLQDQ------ 235
                  Y+  R +  D K T  +     A +   +A   +YP+  VR R+  Q      
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKS 249

Query: 236 HRTYNGAWHCITETWRYERVRGFYKGLTPYLLHVTPNICLVMLIWEKFTN 285
              Y    HC    ++ E    F+KG    +L  T    LV++++++  N
Sbjct: 250 EILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGG-ALVLVLYDEIKN 298



 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 27/173 (15%)

Query: 115 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGM---------- 164
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM          
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 165 -GFVPGMFGVSHGALQFMTYEEM----KNRYNQYRNLPIDIKLTSVEYLTFAAISKLIAA 219
            GF+    G     +++   + +    K++Y Q     +D     + Y     ++   AA
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFV-GNLASGGAA 125

Query: 220 GAT-----YPYQVVRARLQDQ------HRTYNGAWHCITETWRYERVRGFYKG 261
           GAT     YP    R RL          R + G  +C+T+ ++ + + G Y+G
Sbjct: 126 GATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 55  TVPRYDGLSSAFVTIVKKEGVRG 77
           TVPRY G+ S+   I +K G  G
Sbjct: 83  TVPRYKGVPSSLNVISEKIGNGG 105


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 246 ITETWRYERVRGFYKGLTPYLLHVTPNICLVMLI--WEKFTN 285
           I E ++ E + G Y   +P+LL   P +   +LI  + KF N
Sbjct: 63  IYEKYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFSKFAN 104


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 102 AIKTWIQGGNARTPLGPG 119
           ++  W+ GGNA     PG
Sbjct: 577 SVPDWMMGGNANRNFMPG 594


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,325
Number of Sequences: 429
Number of extensions: 3786
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 15
length of query: 287
length of database: 140,377
effective HSP length: 57
effective length of query: 230
effective length of database: 115,924
effective search space: 26662520
effective search space used: 26662520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)