GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002708-TA|BGIBMGA002708-PA|IPR007265|Sec34-like protein
         (785 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    29   0.16 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   2.0  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    24   3.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   8.0  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 106 CISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNMSEQLLADQNKLSGIG 155
           C S  EQ N+  S LH+L   Y F  +  N + + S QLL  + + S +G
Sbjct: 310 CASTCEQANDTPSILHELRNNY-FHMDLENNVQSYSLQLLHQKVQFSVLG 358


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 81  CDDNMKTEDVPYQC 94
           C DNMK E VP +C
Sbjct: 715 CPDNMKLEKVPGEC 728


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 106 CISLNEQINEAMSDLHKLTEQYNFVSNKTNAL 137
           C S  EQ N+  S LH+L   Y  +  + N +
Sbjct: 310 CASTCEQANDTPSILHELRNNYFHMDLENNVI 341


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 406 LLYRPAPGDLAYPNKLLMMEQIALSIQEQSLKRSDSRNSMVSDVSATSQ 454
           + + P P    YP+  LM      ++ +  +   D+ ++ VS V+   Q
Sbjct: 342 IAHNPYPSHSIYPSSNLMPLNNIQNLSQSGINYKDTNDNNVSAVTTQHQ 390


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,019
Number of Sequences: 317
Number of extensions: 7019
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 785
length of database: 114,650
effective HSP length: 62
effective length of query: 723
effective length of database: 94,996
effective search space: 68682108
effective search space used: 68682108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)