Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002706-TA|BGIBMGA002706-PA|undefined
         (103 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF289204-2|AAG42368.1|  316|Homo sapiens odorant receptor HOR3'b...    28   4.3  

>AF289204-2|AAG42368.1|  316|Homo sapiens odorant receptor
           HOR3'beta5 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 50  MSIVLDRSVGVCIRLHAITNFNKNYLQH 77
           +++ LDR V +CI L   T F++ +L H
Sbjct: 118 LAMALDRYVAICIPLRHATIFSQQFLTH 145


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,951
Number of Sequences: 224733
Number of extensions: 329180
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 1
length of query: 103
length of database: 73,234,838
effective HSP length: 78
effective length of query: 25
effective length of database: 55,705,664
effective search space: 1392641600
effective search space used: 1392641600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)