GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002706-TA|BGIBMGA002706-PA|undefined
         (103 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    27   5.8  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    27   5.8  
AY061453-1|AAL29001.1|  985|Drosophila melanogaster LD39136p pro...    26   7.6  
AE013599-1040|AAF58831.2|  985|Drosophila melanogaster CG18011-P...    26   7.6  

>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
          D.melanogaster white-one mutant DNA with Doc
          retroposon, inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 62 IRLHAITNFNKNYLQHTT 79
          I+ H + NF+KNYLQ T+
Sbjct: 75 IKHHHLNNFDKNYLQSTS 92


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
          protein.
          Length = 888

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 62 IRLHAITNFNKNYLQHTT 79
          I+ H + NF+KNYLQ T+
Sbjct: 75 IKHHHLNNFDKNYLQSTS 92


>AY061453-1|AAL29001.1|  985|Drosophila melanogaster LD39136p
           protein.
          Length = 985

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 45  NLHRHMSIVLDRSVGVCIRLHAITNFNKNYLQHTTQTAECCTNVKPEDNEYANSTIC 101
           N+H    +++++ V VC     +++  +  L H       C   K +     ++ +C
Sbjct: 559 NIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACFGSKIDVELLRDAYVC 615


>AE013599-1040|AAF58831.2|  985|Drosophila melanogaster CG18011-PA
           protein.
          Length = 985

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 45  NLHRHMSIVLDRSVGVCIRLHAITNFNKNYLQHTTQTAECCTNVKPEDNEYANSTIC 101
           N+H    +++++ V VC     +++  +  L H       C   K +     ++ +C
Sbjct: 559 NIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACFGSKIDVELLRDAYVC 615


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,174,122
Number of Sequences: 52641
Number of extensions: 138319
Number of successful extensions: 277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 24,830,863
effective HSP length: 74
effective length of query: 29
effective length of database: 20,935,429
effective search space: 607127441
effective search space used: 607127441
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)