GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002706-TA|BGIBMGA002706-PA|undefined
         (103 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    26   4.3  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    25   9.9  

>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 48  RHMSIVLDRSVGVCIRLHAITNFNKNYLQHTTQTAECC 85
           R + +VL  +VG C R   + +F+ +Y +  T  A+CC
Sbjct: 580 RQLELVLT-TVG-CRRYQLLKHFDPSYAKPPTMQADCC 615


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 79  TQTAECCTNVKPEDNEYANSTICLF 103
           T   ECC  +  + +EY+    C+F
Sbjct: 261 TYCDECCNTILKKKSEYSTKYFCVF 285


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,539
Number of Sequences: 27539
Number of extensions: 65299
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 12,573,161
effective HSP length: 71
effective length of query: 32
effective length of database: 10,617,892
effective search space: 339772544
effective search space used: 339772544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)